| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1261 |
|---|
| Symbol | |
|---|
| ID | 4920654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1457762 |
|---|
| End bp | 1460347 |
|---|
| Gene Length | 2586 bp |
|---|
| Protein Length | 861 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640162801 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_001093390 |
|---|
| Protein GI | 127512193 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.392356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0808521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA CCCTTAAGGA CTATCAACGC GACGCAGTAC GAGATGCATT GAACAACCTC
AAAGATGCCC AGGATGACTG GCGACGCAAG TCGCGTAAAT GTGCGTTTTC ACTGACTGCG
GTCACTGGTG CAGGTAAGAC GGTGATGGCC GCTGCCGCTT TCGAAGCGTT GTTTCACGGT
GATGATGAAT TTGATTTCGA CGCAGACCCC GGTGCAGTGG TGATCTGGTT TAGTGATGAT
CCGTCACTAA ACGAGCAGAC GCGCTTCCGC TTGATGGAAG CGAGCGACCG TATTAATCAC
ACCGATTTGG TAGTGGTAGA AAACACCTTT AATCGTCCCC GATTCGAAGC TGGGAAAATT
TATTTTCTTA ACACCCAAAA GTTGGGCAAA AATAGCTTGT TGGTGCGTGG CCACAACCAG
GAAGAATTGG AAGCCCAGGC TGGCTCTTTG TTTCCTGAAA CTCGGCCAGA TCTGCGTGCA
TACACCATCT GGGATACGAT CCAAAATACG ATTGAAGACC CCGAATTAAC TTTGTATCTG
GTGCTGGACG AAGCTCATCG TGGCATGGGC AATGCCGCAG TTAAAGAAAA AGGCACCATA
GTGCAGCGCT TAATTAATGG TTTTGGCAGT GTGCCGGGTA TCCCTGTAGT GTGGGGAATT
TCGGCAACAG TAGAGCGATT TAACAAGGCG ATCGAGTGCG CGGGTAAGCA CATCAAGCTG
CCCAATGTCG TAGTGGATGC GGACAAGGTG CAGGAGTCCG GCTTGATTAA AGACACCATC
TTGCTAGATA TTCCCGACGA AACAGGCGAC TTCGATACTG TGCTTGTACG GCGAGCGACA
GACAAGTTGA AAGAATCCAC TATTGCTTGG CAGGAGTATA CCAAACAACA GGAGGAGGCT
CGCGTTGTTG TTCCGATGAT GGTGCTTCAG GTACCTAATA CGCCGGACCC AAATGAGATC
GGTAGGGCAC TGGATACCAT ATTTGATCGC TACCCAGAAT TGCCTGCTAC CAGTGTGGCG
CATGTTTTTG GTGATCACAC CACGCAGCAA TTCGGTAACC ACAATGTGCC GTACATCGAA
CCGCAACGAG TGCAGGATTC CACTTGGGTG AGGGTATTGA TTGCAAAAGA TGCCATTAGC
ACCGGTTGGG ATTGCCCGCG TGCGGAAGTG ATGGTTTCTT TCCGCGCTGC CAGCGACCGC
ACACATATAA CCCAATTGCT CGGCCGGATG GTGCGTTCGC CTTTAGCCCG CCGCATCCCT
GGTAATGATC GACTCAATGC TGTGGATTGT TTGCTGCCGA AGTTCAACCG CAAGACGGTT
GAAGAGGTGG TGGATGCATT AATGAATGGC GATGATTCTG CACCACCAAC CGGGCGCATT
TTGGTTGATT ATGTGGAATT GAAGCCTCAC CCTAAGGCCA ACAAGTCCGT TTGGGATGCG
TTTGAAGCTC TGCCGTCTCA GAACCGTCCA CAGCGTGGTG CAAAACCGGC AAAGCGTCTT
ACCGTACTGG CCCATGAGTT GGCATCCGAC GGCATTCTGG CTGGTGCAGG CAGGTTGGCT
CATGGCGTGT TGCACAAGGC GCTGGATGCA TTCCAGGAAT CTCAAAAAGA TAAGATCCAG
GGCAAGCGCA AGTCAGTGCT CACCGTGGAT GGCAAGACGG TTATTGCCGA CATGAAGGGC
AAGGAAAAGA CCTTCGATGA GTTTTGGGAA GATGCCGACG TCGCAGTGAT TGACGATGCT
TACCGGCGCG CAGCGCGCAT CTTTAGCCCG GATATCGCAA AAACTTATGT TGAACATTTG
GCACGACAGG TCGCAGACTT AGACGACGAT CCGGAGGAGT TTCTTGAAGC CATCGTAGAG
GCCAGAGTCA CAGTCGCGGG GCTGGGTTTG GTCACTGAAG TTCAAGCTTA TTTCGACGCT
GAAGCTGATA AGCTTGCGAA AGAGTGGCTG GTGAAATATG CATCTCAGAT CAAAGCCCTA
TCAGACGATC GCAAGGAGTC ATATCGACAG ATCGTGGAGA TGAGTACTGA GCCCCAGAGT
TTCGATTTGG TAAAACCTGA ATCTCGCTGT GAAGCAGCCA AGGCACGAGA GAGCGACAAG
GAAATCAAAT TCCCAACTTG GAACAATCAT TTACTGTCAG ACAAGGACGG CAAATATCCA
GTCGAGATGA ATGAATGGGA GCGCACGGTT GTCGAGGCGG AGTCAAAGCG TGATGGCTTT
CTATTCTGGT ATCGCAACCC TCAGCAACCG GGGCAGTCCT CTTTGGGCAT AGCCTATCTT
GAAGATGAGC AATTCAAGAT CGTCCGTCCA GACTTTATCT TTTTCGCGGA GCAAGATGAC
AAGATCGTAG TGGATTTGGT TGATCCGCAT GGGGTCCATC TGGCTGATGC TCTACCAAAG
TTACAGGGCT TGGCAGCTTA TGCAACCAAG CATGCTAACG CTTACCGCCG CATCGAAGCT
GTAGCGGAAG CGCATGGCAA GCTGCGTGTG CTCGATTTGA CCCGCACAGA TGTTCGTCAG
GCAGTGCTGG ATGCATCGAG CGCGAAGAGT CTGTTCGAAG GTCTATCGGC TGATGATTAT
GTATGA
|
|---|
| Protein sequence | MKFTLKDYQR DAVRDALNNL KDAQDDWRRK SRKCAFSLTA VTGAGKTVMA AAAFEALFHG
DDEFDFDADP GAVVIWFSDD PSLNEQTRFR LMEASDRINH TDLVVVENTF NRPRFEAGKI
YFLNTQKLGK NSLLVRGHNQ EELEAQAGSL FPETRPDLRA YTIWDTIQNT IEDPELTLYL
VLDEAHRGMG NAAVKEKGTI VQRLINGFGS VPGIPVVWGI SATVERFNKA IECAGKHIKL
PNVVVDADKV QESGLIKDTI LLDIPDETGD FDTVLVRRAT DKLKESTIAW QEYTKQQEEA
RVVVPMMVLQ VPNTPDPNEI GRALDTIFDR YPELPATSVA HVFGDHTTQQ FGNHNVPYIE
PQRVQDSTWV RVLIAKDAIS TGWDCPRAEV MVSFRAASDR THITQLLGRM VRSPLARRIP
GNDRLNAVDC LLPKFNRKTV EEVVDALMNG DDSAPPTGRI LVDYVELKPH PKANKSVWDA
FEALPSQNRP QRGAKPAKRL TVLAHELASD GILAGAGRLA HGVLHKALDA FQESQKDKIQ
GKRKSVLTVD GKTVIADMKG KEKTFDEFWE DADVAVIDDA YRRAARIFSP DIAKTYVEHL
ARQVADLDDD PEEFLEAIVE ARVTVAGLGL VTEVQAYFDA EADKLAKEWL VKYASQIKAL
SDDRKESYRQ IVEMSTEPQS FDLVKPESRC EAAKARESDK EIKFPTWNNH LLSDKDGKYP
VEMNEWERTV VEAESKRDGF LFWYRNPQQP GQSSLGIAYL EDEQFKIVRP DFIFFAEQDD
KIVVDLVDPH GVHLADALPK LQGLAAYATK HANAYRRIEA VAEAHGKLRV LDLTRTDVRQ
AVLDASSAKS LFEGLSADDY V
|
|---|
| |