47 homologs were found in PanDaTox collection
for query gene SO_4168 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004347  SO_4168  hypothetical protein  100 
 
 		 122 aa  251  2.0000000000000002e-66  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3704  deoxyribodipyrimidine photolyase-related protein  98.65 
 
 		 525 aa  153  1e-36  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_4169  hypothetical protein  98.55 
 
 		 521 aa  142  1e-33  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0524  deoxyribodipyrimidine photolyase-related protein  86.49 
 
 		 521 aa  133  7.000000000000001e-31  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_0429  deoxyribodipyrimidine photolyase-related protein  96.77 
 
 		 525 aa  130  5e-30  Shewanella sp. MR-7  Bacteria  normal  0.50429  normal  1 
 
 
-
 
NC_008321  Shewmr4_3526  deoxyribodipyrimidine photolyase-related protein  85.48 
 
 		 525 aa  117  3.9999999999999996e-26  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013457  VEA_000795  DNA photolyase  77.78 
 
 		 514 aa  111  3e-24  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_0441  deoxyribodipyrimidine photolyase-related protein  80.65 
 
 		 525 aa  110  6e-24  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_06692  hypothetical protein  75.81 
 
 		 514 aa  105  3e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_0777  deoxyribodipyrimidine photolyase-related protein  74.58 
 
 		 528 aa  100  7e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0458  deoxyribodipyrimidine photolyase-related protein  81.82 
 
 		 521 aa  97.8  4e-20  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_0467  deoxyribodipyrimidine photolyase-related protein  81.82 
 
 		 521 aa  97.4  6e-20  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0335  deoxyribodipyrimidine photolyase-related protein  65.71 
 
 		 522 aa  96.3  1e-19  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_3872  deoxyribodipyrimidine photolyase-related protein  80.3 
 
 		 521 aa  94.7  4e-19  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_2497  hypothetical protein  60 
 
 		 569 aa  80.9  0.000000000000006  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008255  CHU_1054  hypothetical protein  49.25 
 
 		 521 aa  79.3  0.00000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  1  normal  0.624164 
 
 
-
 
NC_011312  VSAL_I1806  hypothetical protein  65.96 
 
 		 523 aa  77  0.00000000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.501424  n/a   
 
 
-
 
NC_010717  PXO_01727  deoxyribodipyrimidine photolyase-related protein  48.57 
 
 		 525 aa  72  0.000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_014230  CA2559_07801  deoxyribodipyrimidine photolyase related protein  51.67 
 
 		 511 aa  71.6  0.000000000004  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.179708  n/a   
 
 
-
 
NC_010506  Swoo_3929  deoxyribodipyrimidine photolyase-related protein  65.91 
 
 		 531 aa  70.1  0.000000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008709  Ping_1551  deoxyribodipyrimidine photolyase-related protein  65.91 
 
 		 516 aa  68.9  0.00000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.585368  normal  0.610204 
 
 
-
 
NC_009456  VC0395_0425  hypothetical protein  62.5 
 
 		 516 aa  67  0.00000000008  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000280647  n/a   
 
 
-
 
NC_010087  Bmul_5845  deoxyribodipyrimidine photolyase-related protein  46.67 
 
 		 509 aa  65.5  0.0000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_5626  deoxyribodipyrimidine photolyase-related protein  45.9 
 
 		 534 aa  55.8  0.0000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.147008  normal  0.0556848 
 
 
-
 
NC_011662  Tmz1t_0531  deoxyribodipyrimidine photolyase-related protein  51.11 
 
 		 511 aa  55.5  0.0000002  Thauera sp. MZ1T  Bacteria  normal  0.548466  n/a   
 
 
-
 
NC_010511  M446_5454  deoxyribodipyrimidine photolyase-related protein  45.9 
 
 		 533 aa  55.5  0.0000002  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.120235 
 
 
-
 
NC_009050  Rsph17029_3804  deoxyribodipyrimidine photolyase-related protein  44.83 
 
 		 508 aa  50.8  0.000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.206805 
 
 
-
 
NC_007494  RSP_3077  hypothetical protein  44.83 
 
 		 508 aa  51.2  0.000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_3689  hypothetical protein  41.94 
 
 		 512 aa  50.4  0.000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.116484  n/a   
 
 
-
 
NC_009429  Rsph17025_3928  BCCT transporter  44.83 
 
 		 508 aa  50.4  0.000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.240048  normal  0.840759 
 
 
-
 
NC_007963  Csal_0896  deoxyribodipyrimidine photolyase-related protein  40 
 
 		 524 aa  50.1  0.00001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2956  hypothetical protein  41.38 
 
 		 508 aa  47  0.00008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.888276  normal  0.195961 
 
 
-
 
NC_010501  PputW619_2999  deoxyribodipyrimidine photolyase-related protein  44.83 
 
 		 513 aa  46.6  0.0001  Pseudomonas putida W619  Bacteria  normal  1  normal  0.248063 
 
 
-
 
NC_009484  Acry_1728  deoxyribodipyrimidine photolyase-related protein  43.33 
 
 		 513 aa  45.8  0.0002  Acidiphilium cryptum JF-5  Bacteria  normal  0.483675  n/a   
 
 
-
 
NC_007802  Jann_3641  deoxyribodipyrimidine photolyase-related protein  41.67 
 
 		 508 aa  45.4  0.0003  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.175337 
 
 
-
 
NC_008740  Maqu_3101  deoxyribodipyrimidine photolyase-related protein  41.38 
 
 		 510 aa  45.1  0.0003  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02017  deoxyribodipyrimidine photolyase-related protein  45 
 
 		 512 aa  44.7  0.0004  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.571234  n/a   
 
 
-
 
NC_009952  Dshi_0599  deoxyribodipyrimidine photolyase-related protein  39.29 
 
 		 508 aa  43.9  0.0007  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.315159  normal  1 
 
 
-
 
NC_007794  Saro_2394  deoxyribodipyrimidine photolyase-related protein  42.11 
 
 		 522 aa  43.9  0.0008  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_2281  deoxyribodipyrimidine photolyase-related protein  39.66 
 
 		 507 aa  43.5  0.0009  Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.558867 
 
 
-
 
NC_009512  Pput_3022  deoxyribodipyrimidine photolyase-related protein  43.1 
 
 		 508 aa  43.5  0.001  Pseudomonas putida F1  Bacteria  normal  0.619117  normal  1 
 
 
-
 
NC_009439  Pmen_1204  deoxyribodipyrimidine photolyase-related protein  41.38 
 
 		 520 aa  43.5  0.001  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000923921  normal  1 
 
 
-
 
NC_006369  lpl0260  hypothetical protein  39.34 
 
 		 512 aa  43.5  0.001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008347  Mmar10_1000  deoxyribodipyrimidine photolyase-related protein  41.38 
 
 		 511 aa  43.1  0.001  Maricaulis maris MCS10  Bacteria  normal  0.760695  normal  1 
 
 
-
 
NC_002947  PP_2732  hypothetical protein  43.1 
 
 		 508 aa  43.5  0.001  Pseudomonas putida KT2440  Bacteria  normal  0.380402  normal  1 
 
 
-
 
NC_007492  Pfl01_2809  deoxyribodipyrimidine photolyase-like protein  39.66 
 
 		 512 aa  42  0.003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1785  deoxyribodipyrimidine photolyase-like protein protein  40 
 
 		 519 aa  41.6  0.004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  hitchhiker  0.00721619 
 
 
-
 
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