| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3526 |
|---|
| Symbol | |
|---|
| ID | 4254091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4214249 |
|---|
| End bp | 4215826 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638120163 |
|---|
| Product | deoxyribodipyrimidine photolyase-related protein |
|---|
| Protein accession | YP_735648 |
|---|
| Protein GI | 113971855 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3046] Uncharacterized protein related to deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAC GGCAGCAATC ACAGCAGCAA TTACAACACT TCCATACGGT TAGGCTAATT
TTAGGCGATC AACTCAATAC CCAGCATTCT TGGTTTAACC GCGTTGATGA TCAAGTTCTG
TATGTGATTG CAGAATTGCA TCAAGAAAAC ACCTATGTGA CGCATCATGT GCAAAAGATT
TGCGCGTTCT TTAGTGCCAT GGCGCAGTTT GCCAGCGAGC TTGGCGCTGC TGGGCATCAA
GTGCGTTACC TCACCCTCGA CGATACCCAA GATTTTGCCG ACCTCAACGC ATTAATAGAG
TATTTTGTCG CCGAAACGGG GGCGATTAAG TTTGAATATC AACGGCCTGA CGAATATAGA
CTCCTCGCGC AATTAAGCCA GTTGAAGTTG GCCAATGCCG TTGTGAATTG CGTCGATACC
GAGCACTTTT TATTCCCCTT TGACGAAATT GATAGGGAAT TCCCCCAAGG GCAACACAGG
CTGATGGAGC ATTTTTATCG GAGAATGCGC AAAAGATTCA ATATCTTAAT GACAGATGGC
AAGCCCGTAG GCGGACAGTG GAATTTTGAT GCCAACAACA GGCAAAAGCT TAAATCCCAA
GATATCAAAT CGCTCCCAAC ACCCTTGATG TTTGGCCACA ATGTGCAAGA CATTCTCGAG
CGTCTTCAAC GCCATGGGAT TAATACTATG GGCAAGGCGG ATACGCGTTT ACTCTGGCCG
ATAAACCGCG CGCAAAGCCT CGAATTACTT CAGTATTTTT GTGAATACTG CCTGCCCGCC
TTTGGCCGGT TTCAAGATGC GATGACTCAG CAACATCCAG CACAGTGGAG CCTGTATCAC
AGTAGGTTAT CCTTTAGCCT AAACGCCAAA TTAATCAGCC CATTAGAAGT GATCAATGCG
GTGATTGAGC ACTATCATGC CAATCCTTTT ATTGAGATAG CTCAGGTCGA AGGCTTTGTT
CGGCAAATTC TCGGCTGGCG TGAATATGTA CGCGGTATCT ATTGGGCCAA TATGCCACAG
TACGCCAGCA TTAATGCCCT CGAGGCCACG CGCAAGCTAC CCGACTACTT TTGGCATGGC
AAAACTCGAA TGAATTGCCT ACACCATGCC TTATCTCAGT CACTCGATTA TGCCTATGCC
CATCATATTC AACGCTTAAT GGTGATTGGC AATTTTTGTC TATTGACCGA AATCGCCCCC
GATGAGGTGG ATAAGTGGTA CTTAGGCGTG TATGTGGATG CGATTGAATG GGTCGAAATG
CCCAACACTC GCGGCATGGC GCTATTCGCC GATGGCGGTA TCGTCGGCAC TAAACCCTAT
GCTGCGAGCG GCAGTTATAT CAATAAAATG AGTGATTACT GTGGCAGTTG TCATTACAAG
ATAAAAGAAC GTAGCGGCGC ACTCGCCTGC CCGTTAAACA GCCTATATTG GCGCTTTATG
GATAAACACC GCGCACAGCT CTCCCACAAT CCACGCATCG CCATGCTGTA TCGCACTTGG
GATAAAACCG ATGAGGCGGC AAGGCAGGCC ATTCTGGCAA CGGCCGAACA ACATCTCGCG
CAACTTGAAC GCCTATAG
|
|---|
| Protein sequence | MQLRQQSQQQ LQHFHTVRLI LGDQLNTQHS WFNRVDDQVL YVIAELHQEN TYVTHHVQKI
CAFFSAMAQF ASELGAAGHQ VRYLTLDDTQ DFADLNALIE YFVAETGAIK FEYQRPDEYR
LLAQLSQLKL ANAVVNCVDT EHFLFPFDEI DREFPQGQHR LMEHFYRRMR KRFNILMTDG
KPVGGQWNFD ANNRQKLKSQ DIKSLPTPLM FGHNVQDILE RLQRHGINTM GKADTRLLWP
INRAQSLELL QYFCEYCLPA FGRFQDAMTQ QHPAQWSLYH SRLSFSLNAK LISPLEVINA
VIEHYHANPF IEIAQVEGFV RQILGWREYV RGIYWANMPQ YASINALEAT RKLPDYFWHG
KTRMNCLHHA LSQSLDYAYA HHIQRLMVIG NFCLLTEIAP DEVDKWYLGV YVDAIEWVEM
PNTRGMALFA DGGIVGTKPY AASGSYINKM SDYCGSCHYK IKERSGALAC PLNSLYWRFM
DKHRAQLSHN PRIAMLYRTW DKTDEAARQA ILATAEQHLA QLERL
|
|---|
| |