89 homologs were found in PanDaTox collection
for query gene Shewmr7_0429 on replicon NC_008322
Organism: Shewanella sp. MR-7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009052  Sbal_3872  deoxyribodipyrimidine photolyase-related protein  78.85 
 
 
521 aa  848    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0458  deoxyribodipyrimidine photolyase-related protein  79.04 
 
 
521 aa  849    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3526  deoxyribodipyrimidine photolyase-related protein  95.91 
 
 
525 aa  1044    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0429  deoxyribodipyrimidine photolyase-related protein  100 
 
 
525 aa  1103    Shewanella sp. MR-7  Bacteria  normal  0.50429  normal 
 
 
-
 
NC_008345  Sfri_0777  deoxyribodipyrimidine photolyase-related protein  63.8 
 
 
528 aa  701    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06692  hypothetical protein  69.73 
 
 
514 aa  789    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3704  deoxyribodipyrimidine photolyase-related protein  96.3 
 
 
525 aa  1046    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2497  hypothetical protein  61.06 
 
 
569 aa  701    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0441  deoxyribodipyrimidine photolyase-related protein  79.26 
 
 
525 aa  863    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0335  deoxyribodipyrimidine photolyase-related protein  60.65 
 
 
522 aa  660    Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0425  hypothetical protein  63.62 
 
 
516 aa  674    Vibrio cholerae O395  Bacteria  hitchhiker  0.0000280647  n/a   
 
 
-
 
NC_011663  Sbal223_0467  deoxyribodipyrimidine photolyase-related protein  79.62 
 
 
521 aa  854    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000795  DNA photolyase  70.57 
 
 
514 aa  806    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0524  deoxyribodipyrimidine photolyase-related protein  88 
 
 
521 aa  984    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4169  hypothetical protein  94.74 
 
 
521 aa  1034    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1806  hypothetical protein  58.53 
 
 
523 aa  622  1e-177  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.501424  n/a   
 
 
-
 
NC_008709  Ping_1551  deoxyribodipyrimidine photolyase-related protein  57.62 
 
 
516 aa  602  1.0000000000000001e-171  Psychromonas ingrahamii 37  Bacteria  normal  0.585368  normal  0.610204 
 
 
-
 
NC_010506  Swoo_3929  deoxyribodipyrimidine photolyase-related protein  56.35 
 
 
531 aa  595  1e-169  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1054  hypothetical protein  50.19 
 
 
521 aa  533  1e-150  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.624164 
 
 
-
 
NC_014230  CA2559_07801  deoxyribodipyrimidine photolyase related protein  49.08 
 
 
511 aa  497  1e-139  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.179708  n/a   
 
 
-
 
NC_011662  Tmz1t_0531  deoxyribodipyrimidine photolyase-related protein  49.52 
 
 
511 aa  471  1.0000000000000001e-131  Thauera sp. MZ1T  Bacteria  normal  0.548466  n/a   
 
 
-
 
NC_010087  Bmul_5845  deoxyribodipyrimidine photolyase-related protein  45.42 
 
 
509 aa  457  1e-127  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_01727  deoxyribodipyrimidine photolyase-related protein  43.83 
 
 
525 aa  431  1e-119  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5454  deoxyribodipyrimidine photolyase-related protein  44.85 
 
 
533 aa  412  1e-114  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.120235 
 
 
-
 
NC_011138  MADE_02017  deoxyribodipyrimidine photolyase-related protein  42.52 
 
 
512 aa  409  1e-113  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.571234  n/a   
 
 
-
 
NC_009050  Rsph17029_3804  deoxyribodipyrimidine photolyase-related protein  42.97 
 
 
508 aa  404  1e-111  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.206805 
 
 
-
 
NC_007494  RSP_3077  hypothetical protein  42.77 
 
 
508 aa  402  9.999999999999999e-111  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0896  deoxyribodipyrimidine photolyase-related protein  41.65 
 
 
524 aa  396  1e-109  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1728  deoxyribodipyrimidine photolyase-related protein  43.09 
 
 
513 aa  394  1e-108  Acidiphilium cryptum JF-5  Bacteria  normal  0.483675  n/a   
 
 
-
 
NC_008044  TM1040_2281  deoxyribodipyrimidine photolyase-related protein  43.42 
 
 
507 aa  392  1e-108  Ruegeria sp. TM1040  Bacteria  normal  normal  0.558867 
 
 
-
 
NC_009429  Rsph17025_3928  BCCT transporter  43.55 
 
 
508 aa  392  1e-108  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.240048  normal  0.840759 
 
 
-
 
NC_010505  Mrad2831_5626  deoxyribodipyrimidine photolyase-related protein  41.63 
 
 
534 aa  386  1e-106  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.147008  normal  0.0556848 
 
 
-
 
NC_007802  Jann_3641  deoxyribodipyrimidine photolyase-related protein  41.37 
 
 
508 aa  387  1e-106  Jannaschia sp. CCS1  Bacteria  normal  normal  0.175337 
 
 
-
 
NC_009952  Dshi_0599  deoxyribodipyrimidine photolyase-related protein  42.24 
 
 
508 aa  385  1e-106  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.315159  normal 
 
 
-
 
NC_004578  PSPTO_3689  hypothetical protein  39.96 
 
 
512 aa  388  1e-106  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.116484  n/a   
 
 
-
 
NC_008740  Maqu_3101  deoxyribodipyrimidine photolyase-related protein  40.78 
 
 
510 aa  385  1e-105  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1204  deoxyribodipyrimidine photolyase-related protein  41.13 
 
 
520 aa  380  1e-104  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000923921  normal 
 
 
-
 
NC_006369  lpl0260  hypothetical protein  40.16 
 
 
512 aa  379  1e-103  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_2809  deoxyribodipyrimidine photolyase-like protein  40.58 
 
 
512 aa  377  1e-103  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2999  deoxyribodipyrimidine photolyase-related protein  41.93 
 
 
513 aa  377  1e-103  Pseudomonas putida W619  Bacteria  normal  normal  0.248063 
 
 
-
 
NC_002947  PP_2732  hypothetical protein  40.98 
 
 
508 aa  376  1e-103  Pseudomonas putida KT2440  Bacteria  normal  0.380402  normal 
 
 
-
 
NC_009512  Pput_3022  deoxyribodipyrimidine photolyase-related protein  41.18 
 
 
508 aa  378  1e-103  Pseudomonas putida F1  Bacteria  normal  0.619117  normal 
 
 
-
 
NC_007005  Psyr_1785  deoxyribodipyrimidine photolyase-like protein protein  40.78 
 
 
519 aa  372  1e-102  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00721619 
 
 
-
 
NC_010524  Lcho_1250  deoxyribodipyrimidine photolyase-related protein  41.72 
 
 
513 aa  372  1e-102  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000733779 
 
 
-
 
NC_009485  BBta_2956  hypothetical protein  39.41 
 
 
508 aa  366  1e-100  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.888276  normal  0.195961 
 
 
-
 
NC_009379  Pnuc_1608  deoxyribodipyrimidine photolyase-related protein  42.3 
 
 
511 aa  365  1e-99  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3755  deoxyribodipyrimidine photolyase-related protein  38.95 
 
 
532 aa  363  4e-99  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2394  deoxyribodipyrimidine photolyase-related protein  39.38 
 
 
522 aa  360  5e-98  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1000  deoxyribodipyrimidine photolyase-related protein  38.46 
 
 
511 aa  359  6e-98  Maricaulis maris MCS10  Bacteria  normal  0.760695  normal 
 
 
-
 
NC_011901  Tgr7_1396  DNA photolyase  39.04 
 
 
524 aa  358  1.9999999999999998e-97  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.64137  n/a   
 
 
-
 
NC_008752  Aave_4518  deoxyribodipyrimidine photolyase-related protein  39.73 
 
 
533 aa  351  1e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1235  deoxyribodipyrimidine photolyase-related protein  39.61 
 
 
511 aa  350  4e-95  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.00923753  n/a   
 
 
-
 
NC_008825  Mpe_A2055  putative alpha-deoxyribodipyrimidine photolyase-related protein  40.72 
 
 
510 aa  349  9e-95  Methylibium petroleiphilum PM1  Bacteria  normal  0.527245  normal 
 
 
-
 
NC_013889  TK90_0821  deoxyribodipyrimidine photolyase-related protein  39.05 
 
 
525 aa  341  2e-92  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.627102  normal  0.414989 
 
 
-
 
NC_011729  PCC7424_4487  deoxyribodipyrimidine photolyase-related protein  37.08 
 
 
506 aa  321  1.9999999999999998e-86  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_4251  deoxyribodipyrimidine photolyase-related protein  37.84 
 
 
508 aa  313  4.999999999999999e-84  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2169  deoxyribodipyrimidine photolyase-related protein  36.45 
 
 
498 aa  313  5.999999999999999e-84  Meiothermus ruber DSM 1279  Bacteria  normal  0.752806  normal 
 
 
-
 
NC_009523  RoseRS_0009  deoxyribodipyrimidine photolyase-related protein  36.59 
 
 
508 aa  312  7.999999999999999e-84  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0417103 
 
 
-
 
NC_011831  Cagg_3318  deoxyribodipyrimidine photolyase-related protein  38.52 
 
 
497 aa  311  2e-83  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.420687  hitchhiker  0.00000494763 
 
 
-
 
NC_011884  Cyan7425_3982  deoxyribodipyrimidine photolyase-related protein  37.33 
 
 
507 aa  310  2.9999999999999997e-83  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00134489 
 
 
-
 
NC_013124  Afer_2012  deoxyribodipyrimidine photolyase-related protein  36.78 
 
 
502 aa  309  8e-83  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1171  hypothetical protein  36.58 
 
 
503 aa  303  7.000000000000001e-81  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013158  Huta_0265  deoxyribodipyrimidine photolyase-related protein  35.95 
 
 
510 aa  283  5.000000000000001e-75  Halorhabdus utahensis DSM 12940  Archaea  normal  0.319874  n/a   
 
 
-
 
NC_013202  Hmuk_2689  deoxyribodipyrimidine photolyase-related protein  34.04 
 
 
508 aa  280  7e-74  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.14747 
 
 
-
 
NC_009338  Mflv_3490  deoxyribodipyrimidine photolyase-related protein  35.28 
 
 
505 aa  261  2e-68  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.189609 
 
 
-
 
NC_008146  Mmcs_2924  deoxyribodipyrimidine photolyase-related protein  34.98 
 
 
525 aa  259  9e-68  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1823  deoxyribodipyrimidine photolyase-related protein  33.86 
 
 
502 aa  259  9e-68  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0760009  normal 
 
 
-
 
NC_008705  Mkms_2968  deoxyribodipyrimidine photolyase-related protein  34.98 
 
 
525 aa  259  9e-68  Mycobacterium sp. KMS  Bacteria  normal  0.278599  normal 
 
 
-
 
NC_009077  Mjls_2939  deoxyribodipyrimidine photolyase-related protein  34.98 
 
 
496 aa  259  1e-67  Mycobacterium sp. JLS  Bacteria  normal  normal  0.119687 
 
 
-
 
NC_008726  Mvan_3270  deoxyribodipyrimidine photolyase-related protein  38.94 
 
 
494 aa  255  2.0000000000000002e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.737297  normal 
 
 
-
 
NC_013235  Namu_2791  deoxyribodipyrimidine photolyase-related protein  41.06 
 
 
500 aa  254  3e-66  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000121396  hitchhiker  0.0000216403 
 
 
-
 
NC_013132  Cpin_7174  deoxyribodipyrimidine photolyase-related protein  32.35 
 
 
492 aa  251  3e-65  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3082  deoxyribodipyrimidine photolyase-related protein  37.85 
 
 
510 aa  243  5e-63  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.47785  normal  0.0294382 
 
 
-
 
NC_013440  Hoch_2030  deoxyribodipyrimidine photolyase-related protein  31.99 
 
 
519 aa  243  7.999999999999999e-63  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0662893  normal  0.30492 
 
 
-
 
NC_013757  Gobs_0647  deoxyribodipyrimidine photolyase-related protein  36.93 
 
 
528 aa  233  8.000000000000001e-60  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1117  photolyase family protein  32.82 
 
 
505 aa  229  7e-59  Synechococcus sp. CC9902  Bacteria  normal  0.322412  n/a   
 
 
-
 
NC_008228  Patl_2797  deoxyribodipyrimidine photolyase-related protein  31.92 
 
 
503 aa  226  6e-58  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_26230  deoxyribodipyrimidine photolyase-related protein  31.64 
 
 
532 aa  226  8e-58  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.355559  normal  0.113738 
 
 
-
 
NC_008817  P9515_04871  hypothetical protein  30.19 
 
 
496 aa  226  9e-58  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0423  hypothetical protein  30 
 
 
496 aa  223  8e-57  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.27403  n/a   
 
 
-
 
NC_008312  Tery_3925  deoxyribodipyrimidine photolyase-related protein  30.72 
 
 
476 aa  223  8e-57  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.0027073 
 
 
-
 
NC_009091  P9301_04471  hypothetical protein  29.48 
 
 
496 aa  218  2e-55  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.77539  n/a   
 
 
-
 
NC_007335  PMN2A_0726  hypothetical protein  29.94 
 
 
496 aa  214  3.9999999999999995e-54  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_04781  hypothetical protein  28.71 
 
 
496 aa  212  1e-53  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.289419  n/a   
 
 
-
 
NC_007516  Syncc9605_1361  photolyase family protein  34.05 
 
 
498 aa  211  3e-53  Synechococcus sp. CC9605  Bacteria  normal  0.174089  normal  0.307121 
 
 
-
 
NC_008819  NATL1_15641  hypothetical protein  29.51 
 
 
496 aa  209  1e-52  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.681049 
 
 
-
 
NC_011886  Achl_2542  deoxyribodipyrimidine photolyase-related protein  28.86 
 
 
537 aa  204  5e-51  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000228868 
 
 
-
 
NC_010531  Pnec_1265  deoxyribodipyrimidine photolyase-like protein  54.89 
 
 
186 aa  147  6e-34  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.224709 
 
 
-
 
NC_004347  SO_4168  hypothetical protein  96.77 
 
 
122 aa  130  5.0000000000000004e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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