179 homologs were found in PanDaTox collection
for query gene HMPREF0424_0196 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0196  branched-chain amino acid transport system II carrier protein  100 
 
 
523 aa  1042    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009487  SaurJH9_0171  branched-chain amino acid transport system II carrier protein  48.26 
 
 
449 aa  391  1e-107  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0176  branched-chain amino acid transport system II carrier protein  48.26 
 
 
449 aa  391  1e-107  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2363  branched-chain amino acid transport system II carrier protein  45.9 
 
 
452 aa  372  1e-102  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0712  branched-chain amino acid permease  47.95 
 
 
449 aa  347  2e-94  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.0751355  n/a   
 
 
-
 
NC_012803  Mlut_15150  branched-chain amino acid uptake carrier  45.52 
 
 
464 aa  336  7e-91  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1729  branched-chain amino acid transport system carrier protein  41.67 
 
 
452 aa  324  2e-87  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000468898  n/a   
 
 
-
 
NC_008530  LGAS_0050  branched-chain amino acid permease  40.77 
 
 
454 aa  324  3e-87  Lactobacillus gasseri ATCC 33323  Bacteria  unclonable  0.0000000000377191  normal 
 
 
-
 
NC_005957  BT9727_1751  branched-chain amino acid transport system carrier protein  41.26 
 
 
452 aa  323  5e-87  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  unclonable  1.04073e-17  n/a   
 
 
-
 
NC_013169  Ksed_14620  branched-chain amino acid uptake carrier  44.62 
 
 
461 aa  323  6e-87  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.72122  normal  0.302193 
 
 
-
 
NC_010184  BcerKBAB4_1773  branched-chain amino acid transport system II carrier protein  41.55 
 
 
452 aa  312  6.999999999999999e-84  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.00000130057  n/a   
 
 
-
 
NC_008530  LGAS_0948  branched-chain amino acid permease  41.46 
 
 
475 aa  312  7.999999999999999e-84  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_1945  branched-chain amino acid transport system II carrier protein  41.22 
 
 
452 aa  311  1e-83  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.15478e-28 
 
 
-
 
NC_011725  BCB4264_A1915  branched-chain amino acid transport system II carrier protein  40.45 
 
 
452 aa  307  3e-82  Bacillus cereus B4264  Bacteria  normal  0.0189448  n/a   
 
 
-
 
NC_011658  BCAH187_A2016  branched-chain amino acid transport system II carrier protein  41.81 
 
 
452 aa  300  4e-80  Bacillus cereus AH187  Bacteria  unclonable  0.0000000186213  n/a   
 
 
-
 
NC_003909  BCE_1994  branched-chain amino acid transport system II carrier protein  41.81 
 
 
452 aa  300  5e-80  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000216802  n/a   
 
 
-
 
NC_009674  Bcer98_1161  branched-chain amino acid transport system II carrier protein  39.26 
 
 
451 aa  299  8e-80  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.328055  n/a   
 
 
-
 
NC_011772  BCG9842_B3429  branched-chain amino acid transport system II carrier protein  41.57 
 
 
452 aa  298  1e-79  Bacillus cereus G9842  Bacteria  hitchhiker  0.000169589  hitchhiker  0.000000128434 
 
 
-
 
NC_009513  Lreu_1811  branched-chain amino acid transport system II carrier protein  42.36 
 
 
461 aa  298  2e-79  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000000231514  n/a   
 
 
-
 
NC_008531  LEUM_1440  branched-chain amino acid permease  39.21 
 
 
450 aa  293  7e-78  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0443  branched-chain amino acid permease  37.09 
 
 
482 aa  290  5.0000000000000004e-77  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1365  branched-chain amino acid transport system II carrier protein  40.6 
 
 
451 aa  289  1e-76  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_009513  Lreu_1681  branched-chain amino acid transport system II carrier protein  37.24 
 
 
450 aa  289  1e-76  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1603  branched-chain amino acid transport system II carrier protein  40.47 
 
 
451 aa  283  4.0000000000000003e-75  Bacillus cereus AH187  Bacteria  hitchhiker  0.000000188549  n/a   
 
 
-
 
NC_005945  BAS2920  branched-chain amino acid transport system II carrier protein  38.24 
 
 
450 aa  282  1e-74  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3142  branched chain amino acid ABC transporter carrier protein  38.24 
 
 
450 aa  282  1e-74  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.569946  n/a   
 
 
-
 
NC_011725  BCB4264_A0722  branched-chain amino acid transport system II carrier protein  37.02 
 
 
433 aa  281  2e-74  Bacillus cereus B4264  Bacteria  unclonable  0.0000954192  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1913  branched-chain amino acid transport system II carrier protein  37.31 
 
 
450 aa  280  3e-74  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0827616  n/a   
 
 
-
 
NC_005957  BT9727_2898  branched-chain amino acid transport system carrier protein  38.69 
 
 
450 aa  281  3e-74  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00345664  n/a   
 
 
-
 
NC_006274  BCZK1323  branched-chain amino acid transport protein  40.47 
 
 
451 aa  280  4e-74  Bacillus cereus E33L  Bacteria  decreased coverage  0.00120773  n/a   
 
 
-
 
NC_011773  BCAH820_3153  branched-chain amino acid transport system II carrier protein  38.01 
 
 
450 aa  280  4e-74  Bacillus cereus AH820  Bacteria  n/a    normal  0.611345 
 
 
-
 
NC_011830  Dhaf_2270  branched-chain amino acid transport system II carrier protein  41.82 
 
 
437 aa  280  4e-74  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000000730131  n/a   
 
 
-
 
NC_011773  BCAH820_1533  branched-chain amino acid transport system II carrier protein  40.47 
 
 
451 aa  280  5e-74  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.93507e-19 
 
 
-
 
NC_011772  BCG9842_B3254  branched-chain amino acid transport system II carrier protein  37.31 
 
 
450 aa  279  7e-74  Bacillus cereus G9842  Bacteria  normal  0.104949  normal  0.486135 
 
 
-
 
NC_011772  BCG9842_B4613  branched-chain amino acid transport system II carrier protein  36.79 
 
 
431 aa  279  8e-74  Bacillus cereus G9842  Bacteria  hitchhiker  0.00164861  normal  0.198827 
 
 
-
 
NC_011725  BCB4264_A2053  branched-chain amino acid transport system II carrier protein  37.31 
 
 
450 aa  279  8e-74  Bacillus cereus B4264  Bacteria  normal  0.087988  n/a   
 
 
-
 
NC_005957  BT9727_1324  branched-chain amino acid transport protein  40.23 
 
 
451 aa  279  9e-74  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000000172075  n/a   
 
 
-
 
NC_012793  GWCH70_3188  branched-chain amino acid transport system II carrier protein  36.04 
 
 
436 aa  278  1e-73  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.00000000414074  n/a   
 
 
-
 
NC_009674  Bcer98_1551  branched-chain amino acid transport system II carrier protein  37.31 
 
 
465 aa  278  1e-73  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.818102  n/a   
 
 
-
 
NC_011725  BCB4264_A1497  branched-chain amino acid transport system II carrier protein  39.6 
 
 
451 aa  278  2e-73  Bacillus cereus B4264  Bacteria  unclonable  0.0000870089  n/a   
 
 
-
 
NC_005945  BAS1350  branched-chain amino acid transport system II carrier protein  40.47 
 
 
451 aa  278  2e-73  Bacillus anthracis str. Sterne  Bacteria  normal  0.0128918  n/a   
 
 
-
 
NC_007530  GBAA_1459  branched chain amino acid ABC transporter carrier protein  40.47 
 
 
451 aa  278  2e-73  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.210353  n/a   
 
 
-
 
NC_011658  BCAH187_A2163  branched-chain amino acid transport system II carrier protein  37.09 
 
 
450 aa  277  3e-73  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1565  branched-chain amino acid transport system II carrier protein  40 
 
 
451 aa  277  3e-73  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00000310033  n/a   
 
 
-
 
NC_005957  BT9727_0600  branched-chain amino acid transport system II carrier protein  36.57 
 
 
433 aa  276  8e-73  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  unclonable  2.7393400000000002e-18  n/a   
 
 
-
 
NC_006274  BCZK0601  branched-chain amino acid transport system II carrier protein  36.12 
 
 
433 aa  275  1.0000000000000001e-72  Bacillus cereus E33L  Bacteria  hitchhiker  0.000000939868  n/a   
 
 
-
 
NC_011772  BCG9842_B3847  branched-chain amino acid transport system II carrier protein  39.49 
 
 
448 aa  275  1.0000000000000001e-72  Bacillus cereus G9842  Bacteria  hitchhiker  0.00000203183  hitchhiker  0.00000000239284 
 
 
-
 
NC_010184  BcerKBAB4_0605  branched-chain amino acid transport system II carrier protein  37.92 
 
 
433 aa  274  2.0000000000000002e-72  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.00000149731  n/a   
 
 
-
 
NC_011773  BCAH820_0745  branched-chain amino acid transport system II carrier protein  36.57 
 
 
433 aa  274  3e-72  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000572919 
 
 
-
 
NC_005945  BAS0656  branched-chain amino acid transport system II carrier protein  36.34 
 
 
433 aa  273  4.0000000000000004e-72  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.000000375025  n/a   
 
 
-
 
NC_007530  GBAA_0690  branched chain amino acid ABC transporter carrier protein  36.34 
 
 
433 aa  273  4.0000000000000004e-72  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00000770045  n/a   
 
 
-
 
NC_011658  BCAH187_A0818  branched-chain amino acid transport system II carrier protein  36.79 
 
 
433 aa  272  9e-72  Bacillus cereus AH187  Bacteria  decreased coverage  0.00000157021  n/a   
 
 
-
 
NC_004116  SAG1636  branched-chain amino acid transport system II carrier protein  38.78 
 
 
455 aa  271  1e-71  Streptococcus agalactiae 2603V/R  Bacteria  unclonable  0.000213191  n/a   
 
 
-
 
NC_008262  CPR_0388  branched-chain amino acid transport system II carrier protein  37.99 
 
 
445 aa  272  1e-71  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1182  branched-chain amino acid transport system II carrier protein  36.5 
 
 
440 aa  272  1e-71  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1878  branched-chain amino acid transport system carrier protein  36.91 
 
 
448 aa  270  5e-71  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.343185  n/a   
 
 
-
 
NC_013515  Smon_1461  branched-chain amino acid transport system II carrier protein  36.01 
 
 
435 aa  270  5e-71  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_2095  branched-chain amino acid transport system II carrier protein  36.64 
 
 
450 aa  270  5.9999999999999995e-71  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS1916  branched-chain amino acid transport system II carrier protein  37.09 
 
 
448 aa  270  5.9999999999999995e-71  Bacillus anthracis str. Sterne  Bacteria  normal  0.377142  n/a   
 
 
-
 
NC_007530  GBAA_2063  branched chain amino acid ABC transporter carrier protein  37.36 
 
 
445 aa  270  7e-71  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1869  branched-chain amino acid transport system carrier protein  36.91 
 
 
448 aa  269  8e-71  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0392  branched-chain amino acid transport system II carrier protein  38.23 
 
 
445 aa  268  2e-70  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0759  branched-chain amino acid transport system II carrier protein  35.67 
 
 
431 aa  266  8.999999999999999e-70  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00000381883  n/a   
 
 
-
 
NC_008599  CFF8240_1152  branched-chain amino acid transport system II carrier protein  36.85 
 
 
434 aa  264  3e-69  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.291372  n/a   
 
 
-
 
NC_012793  GWCH70_1435  branched-chain amino acid transport system II carrier protein  38.84 
 
 
420 aa  262  1e-68  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000424202  n/a   
 
 
-
 
NC_009674  Bcer98_0582  branched-chain amino acid transport system II carrier protein  37.25 
 
 
431 aa  260  5.0000000000000005e-68  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.175279  n/a   
 
 
-
 
NC_010816  BLD_0440  branched-chain amino acid permease  38.97 
 
 
445 aa  258  2e-67  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3237  branched-chain amino acid transport system II carrier protein  37.94 
 
 
443 aa  257  4e-67  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.188718  n/a   
 
 
-
 
NC_003909  BCE_2133  branched-chain amino acid transport system II carrier protein  40.51 
 
 
360 aa  252  1e-65  Bacillus cereus ATCC 10987  Bacteria  normal  0.773417  n/a   
 
 
-
 
NC_013171  Apre_1589  branched-chain amino acid transport system II carrier protein  35.4 
 
 
447 aa  251  3e-65  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4283  branched-chain amino acid transport system II carrier protein  36.73 
 
 
441 aa  248  2e-64  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4663  branched-chain amino acid transport system II carrier protein  36.73 
 
 
441 aa  248  3e-64  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00341134 
 
 
-
 
NC_010184  BcerKBAB4_4378  branched-chain amino acid transport system II carrier protein  35.84 
 
 
441 aa  246  9.999999999999999e-64  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4673  branched-chain amino acid transport system II carrier protein  36.28 
 
 
441 aa  244  1.9999999999999999e-63  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3684  branched chain amino acid ABC transporter  36.73 
 
 
548 aa  240  5e-62  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4294  branched-chain amino acid transport system II carrier protein  36.06 
 
 
441 aa  239  1e-61  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4676  branched-chain amino acid transport system II carrier protein  36.06 
 
 
441 aa  237  4e-61  Bacillus cereus AH187  Bacteria  hitchhiker  0.000102787  n/a   
 
 
-
 
NC_007005  Psyr_2015  branched chain amino acid ABC transporter carrier protein  36.3 
 
 
437 aa  236  8e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.453737  normal  0.890863 
 
 
-
 
NC_009656  PSPA7_3325  branched-chain amino acid transport system II carrier protein  35.7 
 
 
437 aa  236  8e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  0.106259  n/a   
 
 
-
 
NC_008463  PA14_43920  branched chain amino acid transporter  36.73 
 
 
437 aa  236  9e-61  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0715  branched-chain amino acid transport system II carrier protein  34.12 
 
 
438 aa  234  2.0000000000000002e-60  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000614247  n/a   
 
 
-
 
NC_011725  BCB4264_A0856  branched-chain amino acid transport system II carrier protein  34.12 
 
 
438 aa  234  3e-60  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1619  branched chain amino acid ABC transporter carrier protein  35.98 
 
 
437 aa  233  6e-60  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.758971  normal  0.0622571 
 
 
-
 
NC_004116  SAG1556  branched-chain amino acid transport system II carrier protein  38.13 
 
 
445 aa  233  7.000000000000001e-60  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.752618  n/a   
 
 
-
 
NC_009439  Pmen_2498  branched-chain amino acid transport system II carrier protein  39.49 
 
 
437 aa  233  7.000000000000001e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.331302  normal  0.203368 
 
 
-
 
NC_004578  PSPTO_2206  branched-chain amino acid transport system II carrier protein  35.63 
 
 
437 aa  233  8.000000000000001e-60  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0700  branched-chain amino acid transport protein  33.65 
 
 
438 aa  232  1e-59  Bacillus cereus E33L  Bacteria  hitchhiker  0.000173599  n/a   
 
 
-
 
NC_009832  Spro_1045  branched-chain amino acid transport system II carrier protein  36.32 
 
 
439 aa  232  1e-59  Serratia proteamaculans 568  Bacteria  normal  0.864553  normal  0.21687 
 
 
-
 
NC_011658  BCAH187_A0966  branched-chain amino acid transport system II carrier protein  33.41 
 
 
438 aa  231  2e-59  Bacillus cereus AH187  Bacteria  unclonable  0.0000000062732  n/a   
 
 
-
 
NC_009997  Sbal195_3644  branched-chain amino acid transport system II carrier protein  33.12 
 
 
470 aa  231  3e-59  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4660  branched-chain amino acid transport system II carrier protein  35.88 
 
 
441 aa  231  3e-59  Bacillus cereus B4264  Bacteria  normal  0.604573  n/a   
 
 
-
 
NC_008463  PA14_39050  branched-chain amino acid transport carrier  35.6 
 
 
437 aa  231  3e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.379222  normal  0.362487 
 
 
-
 
NC_009052  Sbal_0842  branched-chain amino acid transport system II carrier protein  33.12 
 
 
466 aa  231  3e-59  Shewanella baltica OS155  Bacteria  normal  0.809943  n/a   
 
 
-
 
NC_011663  Sbal223_3450  branched-chain amino acid transport system II carrier protein  33.12 
 
 
470 aa  231  3e-59  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3525  branched-chain amino acid transport system II carrier protein  33.12 
 
 
470 aa  231  3e-59  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4445  branched-chain amino acid transport system II carrier protein  35.88 
 
 
441 aa  230  4e-59  Bacillus anthracis str. Sterne  Bacteria  normal  0.36166  n/a   
 
 
-
 
NC_007530  GBAA_4790  branched chain amino acid ABC transporter carrier protein  35.88 
 
 
441 aa  230  4e-59  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2911  branched-chain amino acid transport system II carrier protein  34.78 
 
 
439 aa  230  4e-59  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0578  branched-chain amino acid transport system II carrier protein  35.88 
 
 
441 aa  230  5e-59  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3102  branched-chain amino acid transport system II carrier protein  35.7 
 
 
440 aa  228  1e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
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