| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0196 |
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| Symbol | brnQ |
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| ID | 8709070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 219492 |
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| End bp | 221063 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482315 |
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| Product | branched-chain amino acid transport system II carrier protein |
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| Protein accession | YP_003373460 |
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| Protein GI | 283782706 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1114] Branched-chain amino acid permeases |
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| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGGTG TAAGCATGAG CGTCACAACA CAAAGTGTCA GCACAGATAG TGCCCCGAAA
AAAAGGAACT TGACCATTAT TGAGTCCGCG TACGTGGCGG TCATGTTGTT TGGTATGTTC
TTTGGCGCAG GAAACCTGAT TTTCCCTGTG TTCCTTGGAG CTAATGCAGG AACTAATTTC
GTGCCTGCAA CAATTGGCTT TATTGTTACT GGCGTTGGTT TGCCATTGCT TGGTGTTACG
GCTCTTGCAA TGAGTCGTGC AAACGGTCTT TTTGAACTTT CTAGTAAGCC GAGCAGAAAA
TACGGCATGT TCTTTACTTG TGTGCTGTAT TTAACAATCG GACCATTCTT TGCAATTCCT
CGTTGCGCAA CAACTTCGTA CACTGTTGGT TTGGAGCGCG TTATTCCACA AGACGGAAAC
GGTCAATTGT ATTTGTTCTT GTTCTCTGTG GTTTTCTTCG CGTTAGCATT CTTCTTTGCT
ATGAAGCCTA GCGGAATACT TACATGGGTT GGTAAAGTTC TTACGCCGAT ATTCCTGGTT
TTCTTAGGTA TTCTGGTATT TACTGCACTG TTTTCTCCTG TAAGCGGCGC TTCTGCGGAT
GCTGCTCCTA TAGGGAAGTA TGTTAATGAA TCATTCTTTA CAGGATTCTT AGATGGCTAC
AATACAATGG ATGCTTTAGC TAGCTTGGCT TTTGGCATTA TAGTTGTTAG TACTATTCGA
TCCTTTGGCG TAAAAGACCC TAAAGATGTG GCAGTGAATA CTGTGCGATC TGGATTCTTT
AGCTGCTTGC TTATGGCGTT GATTTACGTC GCAATTGTTG TTGTCGGTGT GCGTAGCCGT
GCACTGTTTA AGCCTGCTGA AAACGGTGGC GTAACTTTGG CGCAAGTTGC ACGCTACCAT
CTTGGAAACG TTGGTTTGCT TGTTCTTGCT GCAACTGTTA CTCTTGCATG CTTAAAGACG
GCAGTTGGTT TAATTGTAAG CTGCTCGGAA ACCTTCTCTA AGTTATTCCC TAAGGGTCCT
AGCTATCGCG TTTGGTCTGT GTTGATTACG CTTGTTTCGT TTGGCCTTGC AAACTTTGGT
TTGAGCACAA TCATCGAATA TGCAGTTCCA GTATTGATGT TCTTGTATCC ACTGTCAATC
GTATTGATTC TTTTGGCTTT GTGCGGTCGA CTTTTTGGAA ATTCCAAAGT CGTGTACGCT
TGGACGCTTG GTTTTACTGG TGTTGCAGCG GTATATGATT TTTTGAATAG TTTGCCACAA
GCTTTACGCA GTGCATTGCA TATGAACGAT ATGTTGGTGG TTGTTCAAAA CTGGCTACCG
TTCTCAGAAT TTGGCATGGC GTGGGTTTGC CCTGCTGTTG TTGGATTTGT TGTTGGTTAT
GTCCGCATGG TTTTATTTGA AAACAAGGAC ATGGAAGAGG TGGCTCGTCT AGCTGCTGGT
CCAGATCTTG AAGGCAGTGT TGCTAGCGAC GATTATTATT CTTCAAGCGA TGCTGAGTTT
AACGAGCCTG CTGACTTCGC TGTATCCGCT AAGTCTACTG TTGACGAACC TAATTTTAGT
GAGCAATCCT AA
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| Protein sequence | MGGVSMSVTT QSVSTDSAPK KRNLTIIESA YVAVMLFGMF FGAGNLIFPV FLGANAGTNF
VPATIGFIVT GVGLPLLGVT ALAMSRANGL FELSSKPSRK YGMFFTCVLY LTIGPFFAIP
RCATTSYTVG LERVIPQDGN GQLYLFLFSV VFFALAFFFA MKPSGILTWV GKVLTPIFLV
FLGILVFTAL FSPVSGASAD AAPIGKYVNE SFFTGFLDGY NTMDALASLA FGIIVVSTIR
SFGVKDPKDV AVNTVRSGFF SCLLMALIYV AIVVVGVRSR ALFKPAENGG VTLAQVARYH
LGNVGLLVLA ATVTLACLKT AVGLIVSCSE TFSKLFPKGP SYRVWSVLIT LVSFGLANFG
LSTIIEYAVP VLMFLYPLSI VLILLALCGR LFGNSKVVYA WTLGFTGVAA VYDFLNSLPQ
ALRSALHMND MLVVVQNWLP FSEFGMAWVC PAVVGFVVGY VRMVLFENKD MEEVARLAAG
PDLEGSVASD DYYSSSDAEF NEPADFAVSA KSTVDEPNFS EQS
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