36 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Mext_0598  CDS  NC_010172  659700  659939  +  240  phosphoribosylformylglycinamidine synthase, purS  YP_001638083  decreased coverage  0.00960533  normal  0.0314109  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0761  CDS  NC_010172  825284  825946  -  663  hypothetical protein  YP_001638244  decreased coverage  0.00665484  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0845  CDS  NC_010172  920550  922727  +  2178  glycosyl transferase family protein  YP_001638321  decreased coverage  0.00935412  normal  0.295818  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0906  CDS  NC_010172  980430  980870  -  441  hypothetical protein  YP_001638382  decreased coverage  0.00446262  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0921  CDS  NC_010172  998101  998370  -  270  hypothetical protein  YP_001638397  decreased coverage  0.00987633  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0954  CDS  NC_010172  1034415  1035305  -  891  protein-(glutamine-N5) methyltransferase, release factor-specific  YP_001638430  decreased coverage  0.00257436  normal  0.0446983  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0961  CDS  NC_010172  1042776  1043756  +  981  alcohol dehydrogenase  YP_001638437  normal  1  decreased coverage  0.00699995  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0962  CDS  NC_010172  1043998  1044567  -  570  Holliday junction resolvase  YP_001638438  normal  1  decreased coverage  0.00555421  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_0963  CDS  NC_010172  1044657  1045298  -  642  YceI family protein  YP_001638439  normal  1  decreased coverage  0.00574961  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1048  CDS  NC_010172  1142585  1146106  +  3522  DNA polymerase III, alpha subunit  YP_001638524  normal  0.195384  decreased coverage  0.00537835  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1377  CDS  NC_010172  1544587  1545891  -  1305  peptidoglycan binding domain-containing protein  YP_001638849  normal  0.309518  decreased coverage  0.00000579578  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1378  CDS  NC_010172  1546630  1547727  +  1098  hypothetical protein  YP_001638850  normal  0.0591071  decreased coverage  0.00000407941  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1485  CDS  NC_010172  1663540  1664265  -  726  DNA polymerase III, epsilon subunit  YP_001638957  decreased coverage  0.00650497  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1626  CDS  NC_010172  1813100  1814233  -  1134  glycosyl transferase group 1  YP_001639096  normal  0.726366  decreased coverage  0.00120235  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1860  CDS  NC_010172  2082035  2082358  -  324  hypothetical protein  YP_001639330  decreased coverage  0.00278106  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1937  CDS  NC_010172  2156621  2157514  -  894  DNA/RNA non-specific endonuclease  YP_001639407  decreased coverage  0.0092281  normal  0.635085  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_1976  CDS  NC_010172  2208644  2210059  +  1416  cytochrome bd ubiquinol oxidase subunit I  YP_001639446  decreased coverage  0.00947535  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2101  CDS  NC_010172  2354556  2357171  +  2616  cell divisionFtsK/SpoIIIE  YP_001639567  normal  0.0889775  decreased coverage  0.00141598  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2297  CDS  NC_010172  2546892  2547401  +  510  hypothetical protein  YP_001639763  hitchhiker  0.00914017  decreased coverage  0.00343572  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2299  CDS  NC_010172  2548334  2548930  +  597  hypothetical protein  YP_001639765  decreased coverage  0.00163404  hitchhiker  0.00316574  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2300  CDS  NC_010172  2548985  2550271  +  1287  O-antigen polymerase  YP_001639766  decreased coverage  0.00840255  hitchhiker  0.00785546  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2335  CDS  NC_010172  2587233  2587982  +  750  hypothetical protein  YP_001639801  decreased coverage  0.000447759  normal  0.901794  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_2952  CDS  NC_010172  3298183  3298440  -  258  hypothetical protein  YP_001640412  normal  1  decreased coverage  0.00803941  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_3246  CDS  NC_010172  3600696  3604133  +  3438  Sel1 domain-containing protein  YP_001640704  normal  1  decreased coverage  0.00516483  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_3421  CDS  NC_010172  3795125  3795712  -  588  hypothetical protein  YP_001640878  decreased coverage  0.00392236  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_3804  CDS  NC_010172  4223977  4225773  -  1797  EAL domain-containing protein  YP_001641249  decreased coverage  0.0052374  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_3969  CDS  NC_010172  4409782  4410549  +  768  NUDIX hydrolase  YP_001641411  decreased coverage  0.00994363  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4420  CDS  NC_010172  4916439  4917632  -  1194  patatin  YP_001641859  decreased coverage  0.0052323  normal  0.804694  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4547  CDS  NC_010172  5080664  5081128  -  465  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ  YP_001641986  normal  1  decreased coverage  0.00834954  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4548  CDS  NC_010172  5081157  5081453  -  297  acyl carrier protein  YP_001641987  normal  1  decreased coverage  0.00748175  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4549  CDS  NC_010172  5081659  5082147  -  489  hypothetical protein  YP_001641988  normal  1  decreased coverage  0.00793895  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4554  CDS  NC_010172  5085320  5085733  +  414  cupin 2 domain-containing protein  YP_001641993  normal  1  decreased coverage  0.0071761  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4616  CDS  NC_010172  5158901  5161840  -  2940  putative monovalent cation/H+ antiporter subunit A  YP_001642055  normal  0.641343  decreased coverage  0.000524948  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4617  CDS  NC_010172  5162276  5162497  -  222  hypothetical protein  YP_001642056  normal  0.169395  decreased coverage  0.000245816  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4747  CDS  NC_010172  5301488  5302042  -  555  CreA family protein  YP_001642186  decreased coverage  0.00543414  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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Mext_4748  CDS  NC_010172  5302116  5303216  +  1101  hypothetical protein  YP_001642187  decreased coverage  0.00502344  normal  1  Methylobacterium extorquens PA1  Bacteria 
 
 
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