22 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Pcal_0093  CDS  NC_009073  93630  94565  -  936  hypothetical protein  YP_001054998  n/a    decreased coverage  0.000000428603  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_0094  CDS  NC_009073  94691  95044  +  354  hypothetical protein  YP_001054999  n/a    decreased coverage  0.000000287436  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_0095  CDS  NC_009073  95095  95622  +  528  hypothetical protein  YP_001055000  n/a    decreased coverage  0.00000036184  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1033  CDS  NC_009073  969421  969891  +  471  50S ribosomal protein L15P  YP_001055924  n/a    decreased coverage  0.00000237076  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1034  CDS  NC_009073  969891  971258  +  1368  preprotein translocase subunit SecY  YP_001055925  n/a    decreased coverage  0.00000391627  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1036  CDS  NC_009073  971426  972247  +  822  hypothetical protein  YP_001055927  n/a    decreased coverage  0.0000026876  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1286  CDS  NC_009073  1199326  1200375  +  1050  CRISPR-associated RAMP Cmr1 family protein  YP_001056176  n/a    decreased coverage  0.00110852  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1287  CDS  NC_009073  1200366  1201070  +  705  CRISPR-associated RAMP Cmr6 family protein  YP_001056177  n/a    decreased coverage  0.00222199  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1418  CDS  NC_009073  1327885  1329744  +  1860  hypothetical protein  YP_001056304  n/a    decreased coverage  0.00970079  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1671  CDS  NC_009073  1558899  1560044  -  1146  major facilitator transporter  YP_001056554  n/a    decreased coverage  0.0000914056  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1672  CDS  NC_009073  1560041  1560796  -  756  hypothetical protein  YP_001056555  n/a    decreased coverage  0.0000720356  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1673  CDS  NC_009073  1560826  1562469  -  1644  AMP-dependent synthetase and ligase  YP_001056556  n/a    decreased coverage  0.000119129  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1775  CDS  NC_009073  1645915  1647216  +  1302  extracellular ligand-binding receptor  YP_001056658  n/a    decreased coverage  0.0000000602209  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1776  CDS  NC_009073  1647705  1648160  +  456  aspartate carbamoyltransferase regulatory subunit  YP_001056659  n/a    decreased coverage  0.0000000334817  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1777  CDS  NC_009073  1648157  1648735  +  579  orotate phosphoribosyltransferase  YP_001056660  n/a    decreased coverage  0.0000000386496  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1778  CDS  NC_009073  1648723  1649607  +  885  dihydroorotate dehydrogenase  YP_001056661  n/a    decreased coverage  0.0000000536627  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1779  CDS  NC_009073  1649585  1650073  -  489  hypothetical protein  YP_001056662  n/a    decreased coverage  0.0000000347212  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1780  CDS  NC_009073  1650067  1651917  -  1851  hypothetical protein  YP_001056663  n/a    decreased coverage  0.0000000813258  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1781  CDS  NC_009073  1651934  1652761  -  828  endonuclease IV  YP_001056664  n/a    decreased coverage  0.0000000369589  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_2030  CDS  NC_009073  1884015  1884731  -  717  nuclease  YP_001056911  n/a    decreased coverage  0.000000000391548  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_R0019  tRNA  NC_009073  1647368  1647452  -  85  tRNA-Leu    n/a    decreased coverage  0.000000026789  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_R0020  tRNA  NC_009073  1647546  1647639  +  94  tRNA-Gly    n/a    decreased coverage  0.0000000277692  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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