| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1287 |
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| Symbol | |
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| ID | 4909258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1200366 |
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| End bp | 1201070 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640125040 |
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| Product | CRISPR-associated RAMP Cmr6 family protein |
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| Protein accession | YP_001056177 |
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| Protein GI | 126459899 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1604] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01898] CRISPR-associated RAMP protein, Cmr6 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00222199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCCCTAG CCTGCCTCAG ACCGGGCTAC AACATCTACA GTTGCGTAGT GAGGCACATC
ATCAGCGCTT ACGAGGGCCC CGGGTCTCCA AAGTTCACAG AACTAAGTAA TCAAATTACA
GTTGAGCTAA AGGATGTGAA AATTGACACG GCCCCCATCT CCGCCTACCT GATGTACCTA
GAGGAGAAGC TCAAGGGAGG CTCCCTCGTG GCGCGGATAG AGGCAGAGGT GACCACCCCC
CTCGTCGTCC ACGTGAGAAA CCCCTACATG CCCCTGGAGA TAGGCCTGGC GTGGCACCCC
TACTTCAACG CCCCCTACAT CCCCGCCACC ACCATAAAGG GAGCCCTCAG GGCGTACTCC
CCGCCCCAGA TCTGCGGAAG GCCGGCCGCA GAGGTCTTTG GCACAGTAGG CGACCAAGGC
GCACTAATAG TGACAGACGC CCTCCCCATA ACCCCAGACG TGTTGGGCGC CGACGTGATA
ACCCCCCACT ACAAAGAGCC AGACCAGGTA GAAGAACACA AGGTGAGACC GATCCCCATA
GTCTTCCCCG TGGTAAAGCC CGGCGCGAGA TTCGCCTTCC ACATAGCCTC CACAGAGCTA
GAACAGCGGT GCCTCTCCGA GATATGGCCA GCCATAGACA GAGCCTTCGC AAAAGGCATA
GGAGCAAAGA CAAAGATAGG CTATAGCAGA CTCAAAAAAC TATAA
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| Protein sequence | MALACLRPGY NIYSCVVRHI ISAYEGPGSP KFTELSNQIT VELKDVKIDT APISAYLMYL
EEKLKGGSLV ARIEAEVTTP LVVHVRNPYM PLEIGLAWHP YFNAPYIPAT TIKGALRAYS
PPQICGRPAA EVFGTVGDQG ALIVTDALPI TPDVLGADVI TPHYKEPDQV EEHKVRPIPI
VFPVVKPGAR FAFHIASTEL EQRCLSEIWP AIDRAFAKGI GAKTKIGYSR LKKL
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