Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1781 |
Symbol | |
ID | 4909033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 1651934 |
End bp | 1652761 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640125530 |
Product | endonuclease IV |
Protein accession | YP_001056664 |
Protein GI | 126460386 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000369589 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGCGAAGG TGTGGTTAGG TCCAGCCGGC ATCCCACAGT ACGTGGTGAA GGCGAAGTCT ACGCTGGACG CAGTCAGAGT GGTGAGAGAG CTGGGCTTAA ACGCCATGGA AGTGGAGTTC GTGCAGGGTG TCCGCATGTC GCGCGAGCTC GCTAAACAGG TTGGCAAGGC CGCTCAGGAT CACGGAGTAC TGTTGTCTGT CCACGCGCCG TACTTTATTA ACTTGTGCTC GGATGAGGCG GATAAGGTGG AGAAGTCTCG GCAGAGGCTT GTAGACTCGT TAGACAGGGC GTATCATATG GGGGCCTGGG TCGTTGTCGT CCACGCCGCC TACTATGGCA AGCTCGGCCC CTCTGGGTGT TATGAAAAGG TGAGGGAGGA GCTGGCTAAG GCGTATAGGG AGGCGGGCGA GCCCTCTGGC GTTTACATCG GCGTGGAGAT CACGGCGAGG AAGAACCAGT TTGGGAGCGT GGAGGAAGCG TTTTCTCTCG CAAAGGAGTT GACGTTTGTC ACCCCCGTGA TAGACTGGGG GCACTTATAC GCGAGGAACA ACGGAACTAT CGACTATGGG GCTGTCCTCG ATTTGTGGAA TAGGGAGTTC CCGGGGAGGC ATATGCATAC ACATTTCACG TCTGTTAGAT ATCGCAATGG GAAATTTGTC GACGAGCACG AGCCTGTTGA AGTGGGGAGG CCGCCCTTTG AGCCGCTTGC AAAACAGTTG GCTGAAAGGG ACATGGCTAT TACGCTTATC TGCGAATCCC CCCTGTTGGA CAAAGATGCG TTGTTTATGA AGGAGGTGTT GGAGCGCCAC GGCGTTAAAC TGTCTTAA
|
Protein sequence | MAKVWLGPAG IPQYVVKAKS TLDAVRVVRE LGLNAMEVEF VQGVRMSREL AKQVGKAAQD HGVLLSVHAP YFINLCSDEA DKVEKSRQRL VDSLDRAYHM GAWVVVVHAA YYGKLGPSGC YEKVREELAK AYREAGEPSG VYIGVEITAR KNQFGSVEEA FSLAKELTFV TPVIDWGHLY ARNNGTIDYG AVLDLWNREF PGRHMHTHFT SVRYRNGKFV DEHEPVEVGR PPFEPLAKQL AERDMAITLI CESPLLDKDA LFMKEVLERH GVKLS
|
| |