34 homologs were found in PanDaTox collection
for query gene RPC_0855 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_0855  twin-arginine translocation pathway signal  100 
 
 
326 aa  662    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.584451  normal 
 
 
-
 
NC_007644  Moth_1981  ABC transporter, substrate-binding protein, aliphatic sulphonates  25.51 
 
 
335 aa  65.1  0.000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0169392  normal 
 
 
-
 
NC_011830  Dhaf_3902  hypothetical protein  25 
 
 
344 aa  58.9  0.0000001  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000029197  n/a   
 
 
-
 
NC_011004  Rpal_0136  ABC transporter substrate-binding protein  25.27 
 
 
330 aa  56.2  0.0000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.778502  n/a   
 
 
-
 
NC_009428  Rsph17025_0777  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  25.7 
 
 
322 aa  53.5  0.000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2645  Substrate-binding region of ABC-type glycine betaine transport system  25.78 
 
 
320 aa  52.8  0.000008  Dickeya dadantii Ech703  Bacteria  normal  0.202001  n/a   
 
 
-
 
NC_007778  RPB_1483  ABC transporter substrate-binding protein  29.25 
 
 
330 aa  52  0.00001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4036  ABC sulfate transport system, periplasmic binding protein  23.19 
 
 
331 aa  52  0.00002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.7213  normal  0.0122121 
 
 
-
 
NC_009712  Mboo_0167  substrate-binding region of ABC-type glycine betaine transport system  26.06 
 
 
385 aa  51.2  0.00002  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009485  BBta_6455  ABC transporter substrate-binding protein  26.98 
 
 
314 aa  50.8  0.00003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.871345  normal 
 
 
-
 
NC_010003  Pmob_1148  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  23.27 
 
 
308 aa  50.4  0.00005  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.00000156737  n/a   
 
 
-
 
NC_011059  Paes_0619  NMT1/THI5 like domain protein  26.97 
 
 
339 aa  50.1  0.00006  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0857  ABC-type transport system, periplasmic component  22.49 
 
 
334 aa  48.9  0.0001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.416217  n/a   
 
 
-
 
NC_007958  RPD_0115  ABC transporter, substrate-binding protein, aliphatic sulphonates  24.34 
 
 
328 aa  48.9  0.0001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.991586 
 
 
-
 
NC_009720  Xaut_3466  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  25 
 
 
330 aa  47.8  0.0002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.106164  normal 
 
 
-
 
NC_010511  M446_2277  NMT1/THI5-like domain-containing protein  24.34 
 
 
313 aa  48.1  0.0002  Methylobacterium sp. 4-46  Bacteria  normal  0.191617  normal  0.0563961 
 
 
-
 
NC_011894  Mnod_0325  NMT1/THI5 like domain protein  23.39 
 
 
313 aa  48.1  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.358073  n/a   
 
 
-
 
NC_011661  Dtur_0564  hypothetical protein  23.17 
 
 
299 aa  47.4  0.0003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.52849  n/a   
 
 
-
 
NC_009667  Oant_1430  NMT1/THI5-like domain-containing protein  24.06 
 
 
314 aa  47  0.0004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6160  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  30.63 
 
 
343 aa  47.4  0.0004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.419436 
 
 
-
 
NC_007575  Suden_1346  putative sulfonate/nitrate transport system substrate-binding protein  22.86 
 
 
327 aa  47  0.0005  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.0000809029  n/a   
 
 
-
 
NC_012917  PC1_1433  putative sulfate ester transporter, periplasmic binding component  23.23 
 
 
381 aa  46.2  0.0007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.748329  n/a   
 
 
-
 
NC_008688  Pden_4881  substrate-binding region of ABC-type glycine betaine transport system  26.24 
 
 
333 aa  46.2  0.0008  Paracoccus denitrificans PD1222  Bacteria  normal  0.730601  normal  0.999131 
 
 
-
 
NC_002967  TDE0212  hypothetical protein  24.82 
 
 
325 aa  46.2  0.0008  Treponema denticola ATCC 35405  Bacteria  unclonable  0.0000000728433  n/a   
 
 
-
 
NC_008262  CPR_1466  hypothetical protein  19.37 
 
 
322 aa  45.8  0.001  Clostridium perfringens SM101  Bacteria  normal  0.0764811  n/a   
 
 
-
 
NC_008261  CPF_1738  hypothetical protein  20.27 
 
 
322 aa  45.8  0.001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0611482  n/a   
 
 
-
 
NC_009012  Cthe_2789  NLPA lipoprotein  29.59 
 
 
360 aa  45.4  0.001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1833  putative sulfate ester transporter, periplasmic binding component  23.23 
 
 
376 aa  45.4  0.001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.97335  n/a   
 
 
-
 
NC_013595  Sros_3067  aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein  28.7 
 
 
336 aa  44.7  0.002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.147181  normal  0.352902 
 
 
-
 
NC_011004  Rpal_2895  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein  23.64 
 
 
324 aa  44.3  0.003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.528553  n/a   
 
 
-
 
NC_011769  DvMF_0519  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  33.82 
 
 
354 aa  42.7  0.008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.1335 
 
 
-
 
NC_007925  RPC_1931  ABC sulfate transport system, periplasmic binding protein  23.56 
 
 
330 aa  42.7  0.008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.10366  normal 
 
 
-
 
NC_011662  Tmz1t_1805  putative periplasmic component of ABC-type transport system  27.66 
 
 
334 aa  42.4  0.01  Thauera sp. MZ1T  Bacteria  normal  0.0502884  n/a   
 
 
-
 
NC_010510  Mrad2831_5823  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  26.36 
 
 
326 aa  42.4  0.01  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.473052  hitchhiker  0.00768111 
 
 
-
 
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