14 homologs were found in PanDaTox collection
for query gene Pput_2963 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_2963  DNA repair ATPase-like protein  100 
 
 
929 aa  1917    Pseudomonas putida F1  Bacteria  normal  normal  0.547311 
 
 
-
 
NC_008757  Pnap_4388  SMC domain-containing protein  28.97 
 
 
1041 aa  57.8  0.000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.33249 
 
 
-
 
NC_011891  A2cp1_1103  SMC domain protein  46 
 
 
808 aa  52.4  0.00004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1849  SMC domain protein  53.06 
 
 
422 aa  50.8  0.0001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3801  SMC domain-containing protein  34.02 
 
 
682 aa  48.9  0.0004  Caulobacter sp. K31  Bacteria  normal  0.0420971  hitchhiker  0.000733932 
 
 
-
 
NC_011898  Ccel_2709  SMC domain protein  28.04 
 
 
1036 aa  48.1  0.0007  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1363  SMC protein-like  39.29 
 
 
875 aa  47.8  0.001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.922778  normal  0.196985 
 
 
-
 
NC_010086  Bmul_4848  ATP-dependent OLD family endonuclease  33.33 
 
 
626 aa  46.6  0.002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0450  SMC domain protein  40.91 
 
 
877 aa  46.2  0.003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.292453  normal 
 
 
-
 
NC_011830  Dhaf_3812  chromosome segregation protein SMC  30.3 
 
 
1198 aa  46.2  0.003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4641  ATP-dependent endonuclease  38.46 
 
 
626 aa  45.1  0.006  Cupriavidus metallidurans CH34  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_009714  CHAB381_0630  hypothetical protein  32.65 
 
 
513 aa  44.7  0.008  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6451  exonuclease SbcC  32.79 
 
 
1291 aa  44.7  0.008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0663249  normal  0.0228854 
 
 
-
 
NC_009440  Msed_0762  SMC domain-containing protein  39.19 
 
 
858 aa  44.7  0.009  Metallosphaera sedula DSM 5348  Archaea  normal  0.0108669  decreased coverage  0.00239369 
 
 
-
 
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