29 homologs were found in PanDaTox collection
for query gene Pden_3265 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_3265  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like  100 
 
 
336 aa  685    Paracoccus denitrificans PD1222  Bacteria  normal  hitchhiker  0.000349224 
 
 
-
 
NC_008254  Meso_2079  ABC transporter, periplasmic substrate-binding protein  24.76 
 
 
342 aa  57  0.0000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_27190  hypothetical protein  26.53 
 
 
376 aa  52.4  0.00001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0646  ABC transporter, substrate-binding protein  28.28 
 
 
311 aa  51.2  0.00002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.714673  n/a   
 
 
-
 
NC_009049  Rsph17029_2299  ABC transporter, substrate-binding protein  28.28 
 
 
311 aa  51.2  0.00002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0813032 
 
 
-
 
NC_009428  Rsph17025_1926  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  25.86 
 
 
328 aa  50.4  0.00005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0900124  normal  0.764974 
 
 
-
 
NC_013173  Dbac_0925  NMT1/THI5 like domain protein  26.49 
 
 
311 aa  48.9  0.0001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0676609  n/a   
 
 
-
 
NC_008553  Mthe_0520  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  27.38 
 
 
323 aa  48.9  0.0001  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_009253  Dred_1573  extracellular solute-binding protein  31.4 
 
 
326 aa  48.5  0.0002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.817202  n/a   
 
 
-
 
NC_008688  Pden_4881  substrate-binding region of ABC-type glycine betaine transport system  28.24 
 
 
333 aa  47.4  0.0004  Paracoccus denitrificans PD1222  Bacteria  normal  0.730601  normal  0.999131 
 
 
-
 
NC_008781  Pnap_1675  putative signal peptide protein  27.27 
 
 
371 aa  45.8  0.001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.88323 
 
 
-
 
NC_008687  Pden_4359  twin-arginine translocation pathway signal  27.87 
 
 
331 aa  45.4  0.001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0041  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  24.26 
 
 
338 aa  44.7  0.002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.487407 
 
 
-
 
NC_014213  Mesil_3279  hypothetical protein  24.39 
 
 
332 aa  43.9  0.003  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000646762  normal  0.0750217 
 
 
-
 
NC_013595  Sros_9276  ABC transporter, substrate-binding protein, aliphatic sulphonates  36.28 
 
 
355 aa  44.3  0.003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2758  NMT1/THI5 like domain protein  26.04 
 
 
354 aa  43.9  0.004  Conexibacter woesei DSM 14684  Bacteria  normal  0.512132  normal  0.127832 
 
 
-
 
NC_013739  Cwoe_3812  NMT1/THI5 like domain protein  28.42 
 
 
365 aa  43.9  0.004  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.424332 
 
 
-
 
NC_010002  Daci_4899  twin-arginine translocation pathway signal  30.43 
 
 
361 aa  43.5  0.005  Delftia acidovorans SPH-1  Bacteria  normal  0.992021  normal 
 
 
-
 
NC_010571  Oter_1255  hypothetical protein  38.24 
 
 
446 aa  43.5  0.005  Opitutus terrae PB90-1  Bacteria  normal  normal  0.329867 
 
 
-
 
NC_009485  BBta_3309  putative alkanesulfonate ABC transporter, substrate binding protein  27.32 
 
 
313 aa  43.5  0.006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.891866  normal 
 
 
-
 
NC_007348  Reut_B4888  ABC transporter, substrate-binding protein, aliphatic sulphonates  26.11 
 
 
339 aa  43.1  0.006  Ralstonia eutropha JMP134  Bacteria  normal  0.108184  n/a   
 
 
-
 
NC_007802  Jann_3755  twin-arginine translocation pathway signal  25.41 
 
 
344 aa  42.7  0.008  Jannaschia sp. CCS1  Bacteria  normal  0.698144  normal 
 
 
-
 
NC_013530  Xcel_0425  aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein  30.4 
 
 
348 aa  42.7  0.008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.313806  n/a   
 
 
-
 
NC_008254  Meso_2921  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like  22.99 
 
 
331 aa  42.7  0.009  Chelativorans sp. BNC1  Bacteria  normal  0.025215  n/a   
 
 
-
 
NC_011004  Rpal_4643  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  29.83 
 
 
351 aa  42.7  0.009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2784  TRAP transporter solute receptor, TAXI family  37.84 
 
 
446 aa  42.7  0.009  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4058  twin-arginine translocation pathway signal  25.73 
 
 
329 aa  42.7  0.009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1356  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  29.52 
 
 
367 aa  42.7  0.01  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.459208  n/a   
 
 
-
 
NC_009049  Rsph17029_1255  ABC transporter, periplasmic substrate-binding protein  24.28 
 
 
326 aa  42.4  0.01  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.113577  normal 
 
 
-
 
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