More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1187 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1187  cyclohexanecarboxyl-CoA dehydrogenase  100 
 
 
389 aa  798    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_2125  acyl-CoA dehydrogenase domain-containing protein  91.26 
 
 
385 aa  730    Polaromonas naphthalenivorans CJ2  Bacteria  hitchhiker  0.00302332  normal  0.0292783 
 
 
-
 
NC_008786  Veis_4106  acyl-CoA dehydrogenase domain-containing protein  85.86 
 
 
385 aa  685    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.615826 
 
 
-
 
NC_007958  RPD_1543  acyl-CoA dehydrogenase-like  77.98 
 
 
383 aa  614  1e-175  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0987624  normal 
 
 
-
 
NC_007925  RPC_1034  acyl-CoA dehydrogenase-like  77.2 
 
 
383 aa  610  1e-173  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0719  cyclohexanecarboxyl-CoA dehydrogenase  78.24 
 
 
383 aa  607  9.999999999999999e-173  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3917  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  75.91 
 
 
383 aa  591  1e-168  Ralstonia eutropha JMP134  Bacteria  normal  0.470111  n/a   
 
 
-
 
NC_009720  Xaut_0913  acyl-CoA dehydrogenase domain-containing protein  63.52 
 
 
390 aa  497  1e-139  Xanthobacter autotrophicus Py2  Bacteria  normal  0.134959  normal 
 
 
-
 
NC_007950  Bpro_5273  acyl-CoA dehydrogenase-like  53.93 
 
 
388 aa  423  1e-117  Polaromonas sp. JS666  Bacteria  hitchhiker  0.0000000768741  normal 
 
 
-
 
NC_009719  Plav_1771  acyl-CoA dehydrogenase domain-containing protein  53.68 
 
 
385 aa  413  1e-114  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.426084  normal  0.166679 
 
 
-
 
NC_013205  Aaci_1209  acyl-CoA dehydrogenase domain protein  47.06 
 
 
383 aa  341  1e-92  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.197079  n/a   
 
 
-
 
NC_013235  Namu_0878  acyl-CoA dehydrogenase domain protein  47.62 
 
 
384 aa  334  2e-90  Nakamurella multipartita DSM 44233  Bacteria  normal  0.578568  normal 
 
 
-
 
NC_013172  Bfae_04670  acyl-CoA dehydrogenase  49.04 
 
 
380 aa  329  6e-89  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4298  acyl-CoA dehydrogenase domain-containing protein  43.08 
 
 
381 aa  298  2e-79  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  35.26 
 
 
380 aa  223  3e-57  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  36.07 
 
 
380 aa  223  4e-57  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001547  branched-chain acyl-CoA dehydrogenase  38.3 
 
 
384 aa  223  4e-57  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5139  acyl-CoA dehydrogenase domain-containing protein  35.81 
 
 
379 aa  218  1e-55  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1179  acyl-CoA dehydrogenase-like protein  35.37 
 
 
392 aa  217  2e-55  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  36.07 
 
 
379 aa  216  4e-55  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  35.81 
 
 
379 aa  215  9.999999999999999e-55  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  215  9.999999999999999e-55  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  35.81 
 
 
379 aa  214  1.9999999999999998e-54  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  214  1.9999999999999998e-54  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  214  1.9999999999999998e-54  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_011773  BCAH820_5434  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  213  3.9999999999999995e-54  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000286159 
 
 
-
 
NC_013525  Tter_0362  acyl-CoA dehydrogenase domain protein  35.08 
 
 
406 aa  213  4.9999999999999996e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  213  5.999999999999999e-54  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  35.54 
 
 
379 aa  213  5.999999999999999e-54  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05484  acyl-CoA dehydrogenase  36.7 
 
 
384 aa  211  2e-53  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_0298  acyl-CoA dehydrogenase domain protein  37.53 
 
 
381 aa  208  1e-52  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1399  acyl-CoA dehydrogenase domain-containing protein  35.64 
 
 
385 aa  207  2e-52  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2781  acyl-CoA dehydrogenase domain-containing protein  35.37 
 
 
385 aa  207  2e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1941  butyryl-CoA dehydrogenase  34.84 
 
 
385 aa  207  3e-52  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0626  acyl-CoA dehydrogenase domain-containing protein  34.6 
 
 
386 aa  207  4e-52  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000265202  n/a   
 
 
-
 
NC_008322  Shewmr7_2662  acyl-CoA dehydrogenase domain-containing protein  34.84 
 
 
385 aa  206  6e-52  Shewanella sp. MR-7  Bacteria  normal  0.553599  normal 
 
 
-
 
NC_009665  Shew185_1491  acyl-CoA dehydrogenase domain-containing protein  35.37 
 
 
385 aa  206  7e-52  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2216  acyl-CoA dehydrogenase domain-containing protein  35.64 
 
 
375 aa  206  7e-52  Pseudomonas putida KT2440  Bacteria  normal  0.585123  normal 
 
 
-
 
NC_005957  BT9727_2327  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  206  7e-52  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3522  acyl-CoA dehydrogenase domain-containing protein  35.9 
 
 
375 aa  206  7e-52  Pseudomonas putida F1  Bacteria  normal  normal  0.0559083 
 
 
-
 
NC_011773  BCAH820_2560  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  206  7e-52  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.1486499999999994e-20 
 
 
-
 
NC_009997  Sbal195_1527  acyl-CoA dehydrogenase domain-containing protein  35.37 
 
 
385 aa  206  7e-52  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  35.9 
 
 
375 aa  205  9e-52  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  205  1e-51  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2854  acyl-CoA dehydrogenase domain protein  35.37 
 
 
385 aa  205  1e-51  Shewanella baltica OS223  Bacteria  normal  0.715109  hitchhiker  0.0000000460252 
 
 
-
 
NC_009052  Sbal_1497  acyl-CoA dehydrogenase domain-containing protein  35.37 
 
 
385 aa  205  1e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2548  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus cereus ATCC 10987  Bacteria  normal  0.438014  n/a   
 
 
-
 
NC_005945  BAS2369  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus anthracis str. Sterne  Bacteria  normal  0.73982  n/a   
 
 
-
 
NC_006274  BCZK2285  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus cereus E33L  Bacteria  normal  0.769883  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2355  acyl-CoA dehydrogenase domain-containing protein  34.95 
 
 
381 aa  204  2e-51  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.774843  n/a   
 
 
-
 
NC_011772  BCG9842_B2812  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000163693 
 
 
-
 
NC_011658  BCAH187_A2603  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus cereus AH187  Bacteria  normal  0.608519  n/a   
 
 
-
 
NC_009719  Plav_2898  acyl-CoA dehydrogenase domain-containing protein  35 
 
 
379 aa  204  2e-51  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000249127 
 
 
-
 
NC_011725  BCB4264_A2511  acyl-CoA dehydrogenase  34.95 
 
 
381 aa  204  2e-51  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1802  acyl-CoA dehydrogenase domain-containing protein  34.95 
 
 
381 aa  204  2e-51  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0402  acyl-CoA dehydrogenase domain-containing protein  34.31 
 
 
380 aa  204  2e-51  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2769  acyl-CoA dehydrogenase domain-containing protein  34.57 
 
 
385 aa  204  2e-51  Shewanella sp. ANA-3  Bacteria  normal  normal  0.329604 
 
 
-
 
NC_007492  Pfl01_2867  Acyl-CoA dehydrogenase-like  35.86 
 
 
375 aa  204  3e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.967944  normal  0.115681 
 
 
-
 
NC_011662  Tmz1t_0733  acyl-CoA dehydrogenase domain protein  35 
 
 
377 aa  204  3e-51  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2595  acyl-CoA dehydrogenase domain-containing protein  34.57 
 
 
385 aa  203  4e-51  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000133331 
 
 
-
 
NC_008228  Patl_0949  acyl-CoA dehydrogenase-like  34.83 
 
 
385 aa  203  5e-51  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0416018  n/a   
 
 
-
 
NC_009675  Anae109_2163  acyl-CoA dehydrogenase domain-containing protein  36.41 
 
 
389 aa  202  6e-51  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.820192  normal  0.287496 
 
 
-
 
NC_009675  Anae109_2136  acyl-CoA dehydrogenase domain-containing protein  34.39 
 
 
380 aa  202  6e-51  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.281355 
 
 
-
 
NC_010678  Rpic_4927  acyl-CoA dehydrogenase domain protein  34.11 
 
 
380 aa  202  7e-51  Ralstonia pickettii 12J  Bacteria  normal  normal  0.905693 
 
 
-
 
NC_012857  Rpic12D_3850  acyl-CoA dehydrogenase domain protein  34.11 
 
 
380 aa  202  7e-51  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007950  Bpro_5265  acyl-CoA dehydrogenase-like  31.85 
 
 
381 aa  202  8e-51  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1679  acyl-CoA dehydrogenase family protein  34.31 
 
 
385 aa  201  9.999999999999999e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0762  acyl-CoA dehydrogenase domain-containing protein  37.17 
 
 
381 aa  202  9.999999999999999e-51  Meiothermus ruber DSM 1279  Bacteria  normal  0.927466  normal  0.783766 
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  33.95 
 
 
379 aa  201  9.999999999999999e-51  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0081  acyl-CoA dehydrogenase domain protein  33.78 
 
 
642 aa  202  9.999999999999999e-51  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  33.95 
 
 
380 aa  201  1.9999999999999998e-50  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_2695  acyl-CoA dehydrogenase domain protein  36 
 
 
382 aa  201  1.9999999999999998e-50  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1340  butyryl-CoA dehydrogenase  35.11 
 
 
385 aa  201  1.9999999999999998e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.92296  n/a   
 
 
-
 
NC_009674  Bcer98_3862  acyl-CoA dehydrogenase domain-containing protein  34.97 
 
 
379 aa  201  1.9999999999999998e-50  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  32.2 
 
 
379 aa  201  3e-50  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4384  acyl-CoA dehydrogenase domain protein  35.11 
 
 
375 aa  200  3.9999999999999996e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.17615  normal 
 
 
-
 
NC_008700  Sama_1377  butyryl-CoA dehydrogenase  34.84 
 
 
385 aa  200  3.9999999999999996e-50  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0267981 
 
 
-
 
NC_010506  Swoo_3200  acyl-CoA dehydrogenase domain-containing protein  34.31 
 
 
385 aa  200  5e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  0.393512  hitchhiker  0.00650034 
 
 
-
 
NC_008699  Noca_4293  acyl-CoA dehydrogenase domain-containing protein  34.03 
 
 
383 aa  199  5e-50  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  33.42 
 
 
376 aa  199  7e-50  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1669  butyryl-CoA dehydrogenase  33.78 
 
 
385 aa  199  7.999999999999999e-50  Shewanella loihica PV-4  Bacteria  normal  0.260436  hitchhiker  0.00156032 
 
 
-
 
NC_011831  Cagg_0741  acyl-CoA dehydrogenase domain protein  33.42 
 
 
417 aa  199  9e-50  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.37799  normal  0.427722 
 
 
-
 
NC_007204  Psyc_0901  putative acyl-CoA dehydrogenase  32.98 
 
 
386 aa  198  1.0000000000000001e-49  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1475  butyryl-CoA dehydrogenase  34.04 
 
 
385 aa  198  1.0000000000000001e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.00937307 
 
 
-
 
NC_007969  Pcryo_1516  butyryl-CoA dehydrogenase  32.98 
 
 
386 aa  199  1.0000000000000001e-49  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  33.42 
 
 
376 aa  198  2.0000000000000003e-49  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  33.42 
 
 
376 aa  197  2.0000000000000003e-49  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  33.42 
 
 
381 aa  197  2.0000000000000003e-49  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  33.42 
 
 
376 aa  197  2.0000000000000003e-49  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000529924 
 
 
-
 
NC_007908  Rfer_2752  acyl-CoA dehydrogenase-like  33.68 
 
 
387 aa  197  2.0000000000000003e-49  Rhodoferax ferrireducens T118  Bacteria  normal  0.171242  n/a   
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  33.42 
 
 
381 aa  198  2.0000000000000003e-49  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0736  acyl-CoA dehydrogenase-like protein  35.29 
 
 
379 aa  197  2.0000000000000003e-49  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.763418 
 
 
-
 
NC_012793  GWCH70_1226  acyl-CoA dehydrogenase domain protein  33.6 
 
 
381 aa  197  2.0000000000000003e-49  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6504  acyl-CoA dehydrogenase domain protein  35.04 
 
 
375 aa  197  3e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.285028  normal  0.547313 
 
 
-
 
NC_009485  BBta_0668  putative acyl-CoA dehydrogenase  32.81 
 
 
379 aa  196  5.000000000000001e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.11454 
 
 
-
 
NC_010322  PputGB1_1842  acyl-CoA dehydrogenase domain-containing protein  35.11 
 
 
375 aa  196  6e-49  Pseudomonas putida GB-1  Bacteria  normal  0.0292697  normal  0.208883 
 
 
-
 
NC_007298  Daro_0096  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  34.84 
 
 
378 aa  196  8.000000000000001e-49  Dechloromonas aromatica RCB  Bacteria  normal  0.0160842  normal 
 
 
-
 
NC_009668  Oant_3106  acyl-CoA dehydrogenase domain-containing protein  35.11 
 
 
375 aa  196  8.000000000000001e-49  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.332334  n/a   
 
 
-
 
NC_009675  Anae109_2137  acyl-CoA dehydrogenase domain-containing protein  34.4 
 
 
382 aa  196  8.000000000000001e-49  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.545271  normal  0.220827 
 
 
-
 
NC_008687  Pden_2906  acyl-CoA dehydrogenase domain-containing protein  35.37 
 
 
375 aa  195  1e-48  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
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