Gene Ssed_1475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1475 
Symbol 
ID5610616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1750148 
End bp1751305 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content51% 
IMG OID640932341 
Productbutyryl-CoA dehydrogenase 
Protein accessionYP_001473214 
Protein GI157374614 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00937307 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATTTCA ATCTGAATGA AGACCAACGT CAGTTTGCCA ATCTTGCCCA TCAATTTTCC 
CAAGAGGAGT TAGCCCCTTT CGCTTCTAAA TGGGATGAGG AACATCACTT CCCTAAAGAT
GTGATTCAGC GTGCCGGCGA GCTCGGTTTT TGCTCTCTAT ACTCACCGGA AAGTGAGGGA
GGCATGGGCC TGTCCAGACT CGACTCCTCT ATCATTTTTG AGCAACTTTC CATGGGGTGC
ACCGCAACCA CCGCCATGCT GACCATTCAC AATATGGCGA CCTGGATGGT CACCAGTTTT
GGCTCACAAA CATTAAGAGA TGCGTGGTCC GAGTCTCTCA CCACAGGGCA GAAGCTGGCT
TCTTACTGTT TAACAGAGGC TGGGGCGGGA AGTGATGCGG CATCTTTGAA GACTAAAGCG
GTGAGAGATG GCGATGAGTA TGTGATCTCC GGCGCTAAAA TGTTTATTTC GGGTGCAGGC
GCCACCGAAC TCTTGGTTGT CATGTGCAGA ACCGGAGAGG CGGGACCAAA AGGGATTTCG
GCTATCGTAG TACCGGCCGA CGCAGCGGGG ATCACCTATG GTAAGGCAGA AGATAAGATG
GGCTGGAATG CTCAACCTAC CCGTGAGATC ACCTTCGATA AAGTACGTGT ACCAGTCTCA
AACCTACTGG GCGAAGAGGG GCAAGGTTTT ACCTTTGCCA TGAAGGGACT CGATGGGGGG
CGCATTAATA TCGCGACCTG TTCAATCGGT ACGGCACAGG CCGCACTCGA ACGTGCGACG
CAATATATGA ATGAGCGTAA GCAGTTTGGT AAACCTATTG CCGCATTTCA GGCGCTTCAA
TTTAAATTAG CCGATATGGC CACCGAACTG GTGGCTGCAA GGCAACTGGT ACGCCTGGCT
GCATTTAAGC TCGATGAAAA AGATCCCGAG GCAACCGCCT ACTGCGCGAT GGCAAAACGC
TTTGCCACCG ATATCGGTTT TCAGGTGTGT GATGCGGCGC TTCAGCTTCA TGGCGGTTAC
GGCTATATCC GTGAATACCC CTTAGAGCGG CATGTACGTG ATGTGCGTGT ACACCAGATC
TTAGAGGGCA CGAACGAGAT CATGCGTTTG ATCATTGCCC GTCGTCTATT GAATGAAAAC
GCAGGACAGA TCCTCTGA
 
Protein sequence
MDFNLNEDQR QFANLAHQFS QEELAPFASK WDEEHHFPKD VIQRAGELGF CSLYSPESEG 
GMGLSRLDSS IIFEQLSMGC TATTAMLTIH NMATWMVTSF GSQTLRDAWS ESLTTGQKLA
SYCLTEAGAG SDAASLKTKA VRDGDEYVIS GAKMFISGAG ATELLVVMCR TGEAGPKGIS
AIVVPADAAG ITYGKAEDKM GWNAQPTREI TFDKVRVPVS NLLGEEGQGF TFAMKGLDGG
RINIATCSIG TAQAALERAT QYMNERKQFG KPIAAFQALQ FKLADMATEL VAARQLVRLA
AFKLDEKDPE ATAYCAMAKR FATDIGFQVC DAALQLHGGY GYIREYPLER HVRDVRVHQI
LEGTNEIMRL IIARRLLNEN AGQIL