More than 300 homologs were found in PanDaTox collection
for query gene Pden_2262 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_1630  phenylalanyl-tRNA synthetase, beta subunit  53.08 
 
 
807 aa  771    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0126985 
 
 
-
 
NC_012850  Rleg_4536  phenylalanyl-tRNA synthetase subunit beta  50.98 
 
 
807 aa  754    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.140615 
 
 
-
 
NC_009719  Plav_0221  phenylalanyl-tRNA synthetase, beta subunit  55.1 
 
 
812 aa  756    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2428  phenylalanyl-tRNA synthetase subunit beta  48.93 
 
 
792 aa  647    Sphingomonas wittichii RW1  Bacteria  normal  normal  0.153279 
 
 
-
 
NC_004310  BR2123  phenylalanyl-tRNA synthetase subunit beta  53.57 
 
 
804 aa  767    Brucella suis 1330  Bacteria  normal  0.615312  n/a   
 
 
-
 
NC_010511  M446_5318  phenylalanyl-tRNA synthetase, beta subunit  53.33 
 
 
808 aa  768    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0273897 
 
 
-
 
NC_009428  Rsph17025_2491  phenylalanyl-tRNA synthetase subunit beta  69.1 
 
 
805 aa  1098    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0797  phenylalanyl-tRNA synthetase subunit beta  53.2 
 
 
804 aa  759    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3487  phenylalanyl-tRNA synthetase subunit beta  51.9 
 
 
808 aa  754    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0065  phenylalanyl-tRNA synthetase subunit beta  49.57 
 
 
812 aa  712    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.145265 
 
 
-
 
NC_010725  Mpop_1604  phenylalanyl-tRNA synthetase, beta subunit  52.71 
 
 
807 aa  769    Methylobacterium populi BJ001  Bacteria  normal  0.140835  normal  0.0323303 
 
 
-
 
NC_011989  Avi_0209  phenylalanyl-tRNA synthetase subunit beta  49.94 
 
 
807 aa  755    Agrobacterium vitis S4  Bacteria  normal  0.212777  n/a   
 
 
-
 
NC_007493  RSP_1761  phenylalanyl-tRNA synthetase subunit beta  69.34 
 
 
805 aa  1111    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0036  phenylalanyl-tRNA synthetase subunit beta  50.86 
 
 
803 aa  723    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.393053  n/a   
 
 
-
 
NC_010581  Bind_3247  phenylalanyl-tRNA synthetase, beta subunit  51.42 
 
 
806 aa  765    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_2039  phenylalanyl-tRNA synthetase subunit beta  53.57 
 
 
804 aa  767    Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0212  phenylalanyl-tRNA synthetase subunit beta  51.23 
 
 
802 aa  722    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1838  phenylalanyl-tRNA synthetase, beta subunit  50.86 
 
 
810 aa  729    Methylocella silvestris BL2  Bacteria  n/a    normal  0.0684561 
 
 
-
 
NC_007643  Rru_A3524  phenylalanyl-tRNA synthetase subunit beta  53.71 
 
 
800 aa  756    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0407  phenylalanyl-tRNA synthetase subunit beta  69.34 
 
 
805 aa  1111    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.70562  normal 
 
 
-
 
NC_011894  Mnod_5551  phenylalanyl-tRNA synthetase, beta subunit  53.69 
 
 
808 aa  784    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.325824  n/a   
 
 
-
 
NC_007778  RPB_0047  phenylalanyl-tRNA synthetase subunit beta  51.36 
 
 
802 aa  733    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0454  phenylalanyl-tRNA synthetase subunit beta  67 
 
 
800 aa  1061    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0444  phenylalanyl-tRNA synthetase subunit beta  50.62 
 
 
803 aa  712    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.341552  normal 
 
 
-
 
NC_007958  RPD_0162  phenylalanyl-tRNA synthetase subunit beta  51.6 
 
 
824 aa  743    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.676244  normal 
 
 
-
 
NC_007964  Nham_0073  phenylalanyl-tRNA synthetase subunit beta  50.3 
 
 
817 aa  719    Nitrobacter hamburgensis X14  Bacteria  normal  0.252873  n/a   
 
 
-
 
NC_010505  Mrad2831_3155  phenylalanyl-tRNA synthetase, beta subunit  52.83 
 
 
806 aa  777    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1930  phenylalanyl-tRNA synthetase, beta subunit  52.78 
 
 
804 aa  749    Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0326717 
 
 
-
 
NC_008043  TM1040_3623  phenylalanyl-tRNA synthetase subunit beta  71.27 
 
 
798 aa  1137    Ruegeria sp. TM1040  Bacteria  normal  normal  0.117267 
 
 
-
 
NC_011369  Rleg2_4271  phenylalanyl-tRNA synthetase subunit beta  51.71 
 
 
810 aa  761    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0677  phenylalanyl-tRNA synthetase subunit beta  54.13 
 
 
801 aa  795    Chelativorans sp. BNC1  Bacteria  normal  0.443307  n/a   
 
 
-
 
NC_010338  Caul_1188  phenylalanyl-tRNA synthetase subunit beta  50.3 
 
 
812 aa  689    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_1312  phenylalanyl-tRNA synthetase subunit beta  48.27 
 
 
803 aa  685    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3094  phenylalanyl-tRNA synthetase subunit beta  46.34 
 
 
820 aa  645    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.067961 
 
 
-
 
NC_009952  Dshi_0237  phenylalanyl-tRNA synthetase subunit beta  67.25 
 
 
798 aa  1041    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0132  phenylalanyl-tRNA synthetase subunit beta  47.96 
 
 
799 aa  638    Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1912  phenylalanyl-tRNA synthetase, beta subunit  49.71 
 
 
850 aa  739    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.24608 
 
 
-
 
NC_008686  Pden_2262  phenylalanyl-tRNA synthetase subunit beta  100 
 
 
795 aa  1595    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.283733 
 
 
-
 
NC_007794  Saro_0689  phenylalanyl-tRNA synthetase subunit beta  47.68 
 
 
796 aa  613  9.999999999999999e-175  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.428867  n/a   
 
 
-
 
NC_009484  Acry_0361  phenylalanyl-tRNA synthetase subunit beta  45.54 
 
 
827 aa  587  1e-166  Acidiphilium cryptum JF-5  Bacteria  normal  0.996315  n/a   
 
 
-
 
NC_002978  WD0425  phenylalanyl-tRNA synthetase subunit beta  41.46 
 
 
779 aa  565  1.0000000000000001e-159  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_2783  phenylalanyl-tRNA synthetase subunit beta  44.5 
 
 
798 aa  543  1e-153  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0587  phenylalanyl-tRNA synthetase subunit beta  37.36 
 
 
785 aa  529  1e-149  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0434  phenylalanyl-tRNA synthetase subunit beta  37.96 
 
 
788 aa  520  1e-146  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1825  phenylalanyl-tRNA synthetase subunit beta  35.32 
 
 
795 aa  441  9.999999999999999e-123  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.713489  n/a   
 
 
-
 
NC_010159  YpAngola_A2620  phenylalanyl-tRNA synthetase subunit beta  35.2 
 
 
795 aa  440  9.999999999999999e-123  Yersinia pestis Angola  Bacteria  hitchhiker  0.00723547  normal 
 
 
-
 
NC_009708  YpsIP31758_1717  phenylalanyl-tRNA synthetase subunit beta  35.2 
 
 
795 aa  440  9.999999999999999e-123  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00142202  n/a   
 
 
-
 
NC_011080  SNSL254_A1449  phenylalanyl-tRNA synthetase subunit beta  34.81 
 
 
795 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1466  phenylalanyl-tRNA synthetase subunit beta  34.69 
 
 
795 aa  436  1e-121  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1835  phenylalanyl-tRNA synthetase subunit beta  34.69 
 
 
795 aa  436  1e-121  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000347523  n/a   
 
 
-
 
NC_011205  SeD_A2007  phenylalanyl-tRNA synthetase subunit beta  34.81 
 
 
795 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.693647 
 
 
-
 
NC_011094  SeSA_A1433  phenylalanyl-tRNA synthetase subunit beta  34.56 
 
 
795 aa  435  1e-120  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.030197 
 
 
-
 
NC_007912  Sde_1582  phenylalanyl-tRNA synthetase subunit beta  35.65 
 
 
816 aa  434  1e-120  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0368  phenylalanyl-tRNA synthetase beta subunit  34.85 
 
 
796 aa  433  1e-120  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0844  phenylalanyl-tRNA synthetase subunit beta  35.01 
 
 
795 aa  424  1e-117  Vibrio cholerae O395  Bacteria  hitchhiker  0.000000000714216  n/a   
 
 
-
 
NC_009654  Mmwyl1_2592  phenylalanyl-tRNA synthetase, beta subunit  34.56 
 
 
794 aa  424  1e-117  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0126631 
 
 
-
 
NC_012917  PC1_1893  phenylalanyl-tRNA synthetase subunit beta  35.37 
 
 
795 aa  422  1e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2672  phenylalanyl-tRNA synthetase subunit beta  36.19 
 
 
794 aa  419  1e-116  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1729  phenylalanyl-tRNA synthetase subunit beta  34.81 
 
 
795 aa  420  1e-116  Enterobacter sp. 638  Bacteria  normal  normal  0.404063 
 
 
-
 
NC_012880  Dd703_2048  phenylalanyl-tRNA synthetase subunit beta  35.41 
 
 
795 aa  422  1e-116  Dickeya dadantii Ech703  Bacteria  normal  0.424555  n/a   
 
 
-
 
NC_011353  ECH74115_2431  phenylalanyl-tRNA synthetase subunit beta  34.27 
 
 
795 aa  421  1e-116  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.175376  normal 
 
 
-
 
CP001509  ECD_01682  phenylalanyl-tRNA synthetase beta subunit  34.23 
 
 
795 aa  418  9.999999999999999e-116  Escherichia coli BL21(DE3)  Bacteria  normal  0.0961927  n/a   
 
 
-
 
CP001637  EcDH1_1929  phenylalanyl-tRNA synthetase, beta subunit  34.23 
 
 
795 aa  418  9.999999999999999e-116  Escherichia coli DH1  Bacteria  hitchhiker  0.0000518334  n/a   
 
 
-
 
NC_010468  EcolC_1918  phenylalanyl-tRNA synthetase subunit beta  34.23 
 
 
795 aa  418  9.999999999999999e-116  Escherichia coli ATCC 8739  Bacteria  normal  0.333448  normal  0.421493 
 
 
-
 
NC_010658  SbBS512_E1955  phenylalanyl-tRNA synthetase subunit beta  34.15 
 
 
795 aa  417  9.999999999999999e-116  Shigella boydii CDC 3083-94  Bacteria  normal  0.111711  n/a   
 
 
-
 
NC_009801  EcE24377A_1932  phenylalanyl-tRNA synthetase subunit beta  34.15 
 
 
795 aa  417  9.999999999999999e-116  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000047761  n/a   
 
 
-
 
NC_009800  EcHS_A1793  phenylalanyl-tRNA synthetase subunit beta  34.23 
 
 
795 aa  418  9.999999999999999e-116  Escherichia coli HS  Bacteria  hitchhiker  0.000955232  n/a   
 
 
-
 
NC_012892  B21_01671  hypothetical protein  34.23 
 
 
795 aa  418  9.999999999999999e-116  Escherichia coli BL21  Bacteria  normal  0.0686641  n/a   
 
 
-
 
NC_010498  EcSMS35_1477  phenylalanyl-tRNA synthetase subunit beta  34.15 
 
 
795 aa  417  9.999999999999999e-116  Escherichia coli SMS-3-5  Bacteria  normal  0.020093  normal 
 
 
-
 
NC_012791  Vapar_1875  phenylalanyl-tRNA synthetase subunit beta  35.61 
 
 
813 aa  416  9.999999999999999e-116  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1981  phenylalanyl-tRNA synthetase subunit beta  34.23 
 
 
792 aa  417  9.999999999999999e-116  Pseudomonas mendocina ymp  Bacteria  normal  0.134276  normal  0.20776 
 
 
-
 
NC_009832  Spro_2149  phenylalanyl-tRNA synthetase subunit beta  34.1 
 
 
795 aa  415  1e-114  Serratia proteamaculans 568  Bacteria  normal  0.625217  normal 
 
 
-
 
NC_007492  Pfl01_1936  phenylalanyl-tRNA synthetase subunit beta  34.16 
 
 
792 aa  415  1e-114  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0927196  normal 
 
 
-
 
NC_009253  Dred_1620  phenylalanyl-tRNA synthetase subunit beta  33.9 
 
 
806 aa  414  1e-114  Desulfotomaculum reducens MI-1  Bacteria  normal  0.263312  n/a   
 
 
-
 
NC_013421  Pecwa_2185  phenylalanyl-tRNA synthetase subunit beta  35.12 
 
 
795 aa  415  1e-114  Pectobacterium wasabiae WPP163  Bacteria  normal  0.861692  n/a   
 
 
-
 
NC_011662  Tmz1t_3020  phenylalanyl-tRNA synthetase subunit beta  36.36 
 
 
796 aa  410  1e-113  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2056  phenylalanyl-tRNA synthetase subunit beta  32.89 
 
 
790 aa  410  1e-113  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1952  phenylalanyl-tRNA synthetase subunit beta  33.58 
 
 
795 aa  409  1e-113  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1908  phenylalanyl-tRNA synthetase subunit beta  33.37 
 
 
795 aa  407  1.0000000000000001e-112  Shewanella baltica OS195  Bacteria  hitchhiker  0.00255913  normal 
 
 
-
 
NC_004578  PSPTO_2383  phenylalanyl-tRNA synthetase, beta subunit  34.44 
 
 
792 aa  408  1.0000000000000001e-112  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295144  n/a   
 
 
-
 
NC_012912  Dd1591_1956  phenylalanyl-tRNA synthetase subunit beta  34.39 
 
 
795 aa  407  1.0000000000000001e-112  Dickeya zeae Ech1591  Bacteria  normal  0.186913  n/a   
 
 
-
 
NC_007005  Psyr_2167  phenylalanyl-tRNA synthetase subunit beta  34.72 
 
 
792 aa  409  1.0000000000000001e-112  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007798  NSE_0426  putative phenylalanyl-tRNA synthetase, beta subunit  32.56 
 
 
876 aa  409  1.0000000000000001e-112  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.333075  n/a   
 
 
-
 
NC_007947  Mfla_1998  phenylalanyl-tRNA synthetase beta subunit  34.24 
 
 
784 aa  408  1.0000000000000001e-112  Methylobacillus flagellatus KT  Bacteria  normal  0.109142  normal 
 
 
-
 
NC_007948  Bpro_2107  phenylalanyl-tRNA synthetase subunit beta  34.25 
 
 
808 aa  407  1.0000000000000001e-112  Polaromonas sp. JS666  Bacteria  normal  0.123782  normal  0.168772 
 
 
-
 
NC_008789  Hhal_0432  phenylalanyl-tRNA synthetase subunit beta  34.28 
 
 
792 aa  407  1.0000000000000001e-112  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2395  phenylalanyl-tRNA synthetase subunit beta  34.88 
 
 
814 aa  409  1.0000000000000001e-112  Acidovorax sp. JS42  Bacteria  normal  0.990048  normal 
 
 
-
 
NC_011992  Dtpsy_1453  phenylalanyl-tRNA synthetase subunit beta  34.88 
 
 
814 aa  409  1.0000000000000001e-112  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2638  phenylalanyl-tRNA synthetase subunit beta  32.92 
 
 
793 aa  403  1e-111  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010717  PXO_01388  phenylalanyl-tRNA synthetase subunit beta  35.99 
 
 
792 aa  403  1e-111  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.547763  n/a   
 
 
-
 
NC_007517  Gmet_1416  phenylalanyl-tRNA synthetase subunit beta  34.96 
 
 
801 aa  404  1e-111  Geobacter metallireducens GS-15  Bacteria  normal  0.0211445  normal  0.563013 
 
 
-
 
NC_007520  Tcr_1662  phenylalanyl-tRNA synthetase, beta subunit  33.04 
 
 
793 aa  404  1e-111  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1341  phenylalanyl-tRNA synthetase subunit beta  33.97 
 
 
810 aa  404  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1750  phenylalanyl-tRNA synthetase subunit beta  34.65 
 
 
816 aa  405  1e-111  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0199771 
 
 
-
 
NC_012560  Avin_20470  phenylalanyl-tRNA synthetase subunit beta  34.28 
 
 
792 aa  404  1e-111  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2800  phenylalanyl-tRNA synthetase subunit beta  34.16 
 
 
802 aa  404  1e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1874  phenylalanyl-tRNA synthetase subunit beta  33.25 
 
 
795 aa  404  1e-111  Shewanella baltica OS155  Bacteria  decreased coverage  0.000755096  n/a   
 
 
-
 
NC_013456  VEA_003705  phenylalanyl-tRNA synthetase beta chain  33.9 
 
 
801 aa  402  1e-111  Vibrio sp. Ex25  Bacteria  normal  0.374236  n/a   
 
 
-
 
NC_010501  PputW619_1972  phenylalanyl-tRNA synthetase subunit beta  34.64 
 
 
793 aa  402  9.999999999999999e-111  Pseudomonas putida W619  Bacteria  normal  normal  0.025038 
 
 
-
 
NC_009665  Shew185_1901  phenylalanyl-tRNA synthetase subunit beta  33.13 
 
 
795 aa  402  9.999999999999999e-111  Shewanella baltica OS185  Bacteria  hitchhiker  0.00294003  n/a   
 
 
-
 
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