240 homologs were found in PanDaTox collection
for query gene GSU3379 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU3379  aIF-2BI family translation initiation factor  100 
 
 
346 aa  709    Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0072  translation initiation factor 2B subunit I  88.44 
 
 
346 aa  638    Geobacter metallireducens GS-15  Bacteria  normal  normal  0.25912 
 
 
-
 
NC_009483  Gura_4322  aIF-2BI family translation initiation factor  84.59 
 
 
346 aa  611  9.999999999999999e-175  Geobacter uraniireducens Rf4  Bacteria  normal  0.394096  n/a   
 
 
-
 
NC_008609  Ppro_0510  aIF-2BI family translation initiation factor  83.58 
 
 
346 aa  591  1e-168  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3596  translation initiation factor, aIF-2BI family  79.71 
 
 
346 aa  572  1.0000000000000001e-162  Geobacter lovleyi SZ  Bacteria  normal  0.82629  n/a   
 
 
-
 
NC_012918  GM21_3753  translation initiation factor, aIF-2BI family  77.33 
 
 
346 aa  540  9.999999999999999e-153  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3646  translation initiation factor, aIF-2BI family  77.03 
 
 
346 aa  538  9.999999999999999e-153  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0621  translation initiation factor 2B subunit I  62.28 
 
 
342 aa  432  1e-120  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0997628  n/a   
 
 
-
 
NC_007498  Pcar_2170  aIF-2BI family translation initiation factor  66.76 
 
 
344 aa  421  1e-117  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1175  translation initiation factor 2B subunit I  60.12 
 
 
354 aa  420  1e-116  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1519  aIF-2BI family translation initiation factor  59.94 
 
 
350 aa  405  1.0000000000000001e-112  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.889993  n/a   
 
 
-
 
NC_010483  TRQ2_0016  aIF-2BI family translation initiation factor  57.56 
 
 
343 aa  400  9.999999999999999e-111  Thermotoga sp. RQ2  Bacteria  normal  0.570831  n/a   
 
 
-
 
NC_009486  Tpet_0016  aIF-2BI family translation initiation factor  57.56 
 
 
343 aa  400  9.999999999999999e-111  Thermotoga petrophila RKU-1  Bacteria  normal  0.339634  n/a   
 
 
-
 
NC_009616  Tmel_0254  aIF-2BI family translation initiation factor  58.7 
 
 
346 aa  400  9.999999999999999e-111  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1360  translation initiation factor, aIF-2BI family  55.62 
 
 
342 aa  382  1e-105  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0559648  n/a   
 
 
-
 
NC_011831  Cagg_3560  translation initiation factor, aIF-2BI family  54.78 
 
 
357 aa  372  1e-102  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0810  aIF-2BI family translation initiation factor  55.39 
 
 
349 aa  373  1e-102  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3749  putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase  54.65 
 
 
354 aa  371  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4687  methylthioribose-1-phosphate isomerase  55.79 
 
 
350 aa  365  1e-100  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_2349  aIF-2BI family translation initiation factor  53.69 
 
 
358 aa  363  3e-99  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.944221  n/a   
 
 
-
 
NC_013440  Hoch_6765  translation initiation factor, aIF-2BI family  54.26 
 
 
369 aa  363  3e-99  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2064  aIF-2BI family translation initiation factor  54.44 
 
 
346 aa  361  9e-99  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000777983  n/a   
 
 
-
 
NC_002936  DET0518  aIF-2BI family translation initiation factor  57.27 
 
 
334 aa  360  2e-98  Dehalococcoides ethenogenes 195  Bacteria  normal  0.294825  n/a   
 
 
-
 
NC_013552  DhcVS_459  methylthioribose-1-phosphate isomerase  56.67 
 
 
332 aa  359  4e-98  Dehalococcoides sp. VS  Bacteria  normal  0.14852  n/a   
 
 
-
 
NC_011899  Hore_18480  putative translation initiation factor, aIF-2BI family  53.08 
 
 
355 aa  357  9.999999999999999e-98  Halothermothrix orenii H 168  Bacteria  normal  0.0224403  n/a   
 
 
-
 
NC_008312  Tery_2078  methylthioribose-1-phosphate isomerase  53.33 
 
 
353 aa  357  1.9999999999999998e-97  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.424406 
 
 
-
 
NC_009455  DehaBAV1_0494  translation initiation factor 2B subunit I  56.36 
 
 
332 aa  355  5e-97  Dehalococcoides sp. BAV1  Bacteria  normal  0.93452  n/a   
 
 
-
 
NC_007413  Ava_3544  methylthioribose-1-phosphate isomerase  54.91 
 
 
347 aa  353  2e-96  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1643  translation initiation factor  54.91 
 
 
344 aa  353  2e-96  'Nostoc azollae' 0708  Bacteria  normal  0.226672  n/a   
 
 
-
 
NC_009523  RoseRS_0485  aIF-2BI family translation initiation factor  56.81 
 
 
353 aa  352  5e-96  Roseiflexus sp. RS-1  Bacteria  normal  0.646058  normal 
 
 
-
 
NC_010424  Daud_0648  aIF-2BI family translation initiation factor  54.84 
 
 
348 aa  349  5e-95  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.674044  n/a   
 
 
-
 
NC_011658  BCAH187_A0441  methylthioribose-1-phosphate isomerase  51.18 
 
 
348 aa  345  8e-94  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0394  methylthioribose-1-phosphate isomerase  51.48 
 
 
348 aa  344  1e-93  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4924  methylthioribose-1-phosphate isomerase  51.18 
 
 
348 aa  344  1e-93  Bacillus cereus G9842  Bacteria  normal  0.64519  normal 
 
 
-
 
NC_013216  Dtox_1186  translation initiation factor, aIF-2BI family  55.72 
 
 
345 aa  344  1e-93  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000144196  normal  0.031954 
 
 
-
 
NC_013385  Adeg_0964  translation initiation factor, aIF-2BI family  55.15 
 
 
351 aa  344  1e-93  Ammonifex degensii KC4  Bacteria  normal  0.518904  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0327  methylthioribose-1-phosphate isomerase  50.89 
 
 
348 aa  343  2e-93  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1881  aIF-2BI family translation initiation factor  51.76 
 
 
345 aa  343  2e-93  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3765  translation initiation factor, aIF-2BI family  56.14 
 
 
345 aa  342  8e-93  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0692423  n/a   
 
 
-
 
NC_009675  Anae109_4334  eIF-2B alpha/beta/delta-related uncharacterized protein  55.22 
 
 
337 aa  340  2e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0846  methylthioribose-1-phosphate isomerase  50.29 
 
 
356 aa  339  2.9999999999999998e-92  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0332  methylthioribose-1-phosphate isomerase  50.3 
 
 
348 aa  339  4e-92  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0347  methylthioribose-1-phosphate isomerase  50.3 
 
 
347 aa  339  4e-92  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0379  methylthioribose-1-phosphate isomerase  50.3 
 
 
348 aa  339  4e-92  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_2717  methylthioribose-1-phosphate isomerase  52.37 
 
 
349 aa  339  5e-92  Cyanothece sp. PCC 8802  Bacteria  normal  0.143544  normal  0.136837 
 
 
-
 
NC_011726  PCC8801_3396  methylthioribose-1-phosphate isomerase  52.37 
 
 
349 aa  339  5e-92  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_005957  BT9727_0316  methylthioribose-1-phosphate isomerase  50.3 
 
 
348 aa  338  9e-92  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0319  methylthioribose-1-phosphate isomerase  50 
 
 
347 aa  338  9.999999999999999e-92  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0156  eIF-2B alpha/beta/delta-related uncharacterized protein  53.74 
 
 
354 aa  336  2.9999999999999997e-91  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.232234  normal 
 
 
-
 
NC_011206  Lferr_1015  translation initiation factor, aIF-2BI family  50.29 
 
 
350 aa  335  7e-91  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.253315  unclonable  0.0000000000388932 
 
 
-
 
NC_011761  AFE_0893  translation initiation factor, putative, aIF-2BI family  50.29 
 
 
350 aa  335  7e-91  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.592347  n/a   
 
 
-
 
NC_011884  Cyan7425_3816  methylthioribose-1-phosphate isomerase  53.43 
 
 
350 aa  334  2e-90  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.732544 
 
 
-
 
NC_007644  Moth_0703  translation initiation factor 2B subunit I  53.24 
 
 
351 aa  333  2e-90  Moorella thermoacetica ATCC 39073  Bacteria  normal  hitchhiker  0.000787843 
 
 
-
 
NC_011769  DvMF_2235  translation initiation factor, aIF-2BI family  53.03 
 
 
350 aa  332  4e-90  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_014148  Plim_1381  translation initiation factor, aIF-2BI family  52.21 
 
 
362 aa  332  4e-90  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.705402  n/a   
 
 
-
 
NC_008576  Mmc1_1944  translation initiation factor 2B subunit I  53.56 
 
 
352 aa  328  8e-89  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00466755  normal  0.570212 
 
 
-
 
NC_010085  Nmar_0169  aIF-2BI family translation initiation factor  46.65 
 
 
345 aa  327  1.0000000000000001e-88  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00178496 
 
 
-
 
NC_010730  SYO3AOP1_0676  translation initiation factor, aIF-2BI family  50.76 
 
 
339 aa  327  2.0000000000000001e-88  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0103604  n/a   
 
 
-
 
NC_011661  Dtur_0929  translation initiation factor, aIF-2BI family  49.7 
 
 
344 aa  327  2.0000000000000001e-88  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.119435  n/a   
 
 
-
 
NC_011901  Tgr7_1534  translation initiation factor, aIF-2BI family  53.31 
 
 
348 aa  327  2.0000000000000001e-88  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0076  translation initiation factor 2B subunit I  53.31 
 
 
355 aa  325  5e-88  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0419  translation initiation factor 2B subunit I family (IF-2BI)  48.81 
 
 
347 aa  324  1e-87  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.04546  normal 
 
 
-
 
NC_008554  Sfum_1706  eIF-2B alpha/beta/delta-related uncharacterized proteins  53.57 
 
 
349 aa  321  1.9999999999999998e-86  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.307709  normal  0.360385 
 
 
-
 
NC_008751  Dvul_2877  eIF-2B alpha/beta/delta-related uncharacterized proteins  52.29 
 
 
350 aa  318  7.999999999999999e-86  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_0595  translation initiation factor, aIF-2BI family  48.1 
 
 
328 aa  317  2e-85  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_2312  translation initiation factor, aIF-2BI family  54.91 
 
 
378 aa  317  3e-85  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0639  aIF-2BI family translation initiation factor  51.05 
 
 
372 aa  317  3e-85  Petrotoga mobilis SJ95  Bacteria  normal  0.249987  n/a   
 
 
-
 
NC_013411  GYMC61_1741  methylthioribose-1-phosphate isomerase  49.41 
 
 
355 aa  317  3e-85  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_4317  translation initiation factor, aIF-2BI family  55.09 
 
 
339 aa  315  7e-85  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2493  eIF-2B alpha/beta/delta-related uncharacterized protein  50 
 
 
351 aa  315  8e-85  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3774  methylthioribose-1-phosphate isomerase  46.85 
 
 
351 aa  314  9.999999999999999e-85  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4053  methylthioribose-1-phosphate isomerase  46.85 
 
 
351 aa  314  9.999999999999999e-85  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_2033  aIF-2BI family translation initiation factor  48.18 
 
 
354 aa  314  9.999999999999999e-85  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3942  methylthioribose-1-phosphate isomerase  46.85 
 
 
351 aa  314  1.9999999999999998e-84  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3789  methylthioribose-1-phosphate isomerase  47.15 
 
 
351 aa  313  1.9999999999999998e-84  Bacillus cereus E33L  Bacteria  normal  0.700016  n/a   
 
 
-
 
NC_007530  GBAA_4251  methylthioribose-1-phosphate isomerase  46.85 
 
 
351 aa  314  1.9999999999999998e-84  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4339  translation initiation factor, aIF-2BI family  54.79 
 
 
339 aa  314  1.9999999999999998e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4159  methylthioribose-1-phosphate isomerase  46.85 
 
 
351 aa  313  2.9999999999999996e-84  Bacillus cereus AH187  Bacteria  normal  0.109098  n/a   
 
 
-
 
NC_011898  Ccel_1289  methylthioribose-1-phosphate isomerase  50.15 
 
 
364 aa  313  3.9999999999999997e-84  Clostridium cellulolyticum H10  Bacteria  normal  0.0889723  n/a   
 
 
-
 
NC_007760  Adeh_4186  translation initiation factor 2B subunit I  56.04 
 
 
339 aa  311  1e-83  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4139  methylthioribose-1-phosphate isomerase  47.15 
 
 
353 aa  310  2e-83  Bacillus cereus B4264  Bacteria  normal  0.196624  n/a   
 
 
-
 
NC_008463  PA14_23250  methylthioribose-1-phosphate isomerase  51.05 
 
 
358 aa  310  2e-83  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0078361 
 
 
-
 
NC_013889  TK90_1203  translation initiation factor, aIF-2BI family  49.85 
 
 
358 aa  310  2.9999999999999997e-83  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.178333 
 
 
-
 
NC_007604  Synpcc7942_1992  translation initiation factor 2B subunit I  46.15 
 
 
348 aa  308  5.9999999999999995e-83  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.337411 
 
 
-
 
NC_013223  Dret_0503  translation initiation factor, aIF-2BI family  47.94 
 
 
350 aa  308  8e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_2613  translation initiation factor, aIF-2BI family  44.57 
 
 
349 aa  308  1.0000000000000001e-82  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4098  methylthioribose-1-phosphate isomerase  46.55 
 
 
351 aa  307  2.0000000000000002e-82  Bacillus cereus ATCC 10987  Bacteria  normal  0.463174  n/a   
 
 
-
 
NC_009656  PSPA7_1960  methylthioribose-1-phosphate isomerase  49.85 
 
 
358 aa  306  3e-82  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0191  translation initiation factor, aIF-2BI family  49.55 
 
 
348 aa  306  4.0000000000000004e-82  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1791  translation initiation factor 2B subunit I  50.6 
 
 
321 aa  305  5.0000000000000004e-82  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_008346  Swol_0779  S-methyl-5-thioribose-1-phosphate isomerase  48.8 
 
 
346 aa  305  1.0000000000000001e-81  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.404257  n/a   
 
 
-
 
NC_011772  BCG9842_B1099  methylthioribose-1-phosphate isomerase  46.55 
 
 
353 aa  305  1.0000000000000001e-81  Bacillus cereus G9842  Bacteria  normal  normal  0.767768 
 
 
-
 
NC_009637  MmarC7_0865  aIF-2BI family translation initiation factor  51.2 
 
 
321 aa  304  2.0000000000000002e-81  Methanococcus maripaludis C7  Archaea  normal  normal  0.0114166 
 
 
-
 
NC_010717  PXO_00735  methylthioribose-1-phosphate isomerase  48.95 
 
 
354 aa  302  6.000000000000001e-81  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.214802  n/a   
 
 
-
 
NC_009635  Maeo_0027  aIF-2BI family translation initiation factor  48.4 
 
 
337 aa  300  2e-80  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3861  methylthioribose-1-phosphate isomerase  46.25 
 
 
349 aa  300  2e-80  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.583783  n/a   
 
 
-
 
NC_012560  Avin_15800  methylthioribose-1-phosphate isomerase  50 
 
 
358 aa  296  3e-79  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3648  methylthioribose-1-phosphate isomerase  50.6 
 
 
365 aa  296  4e-79  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.295966  normal  0.479816 
 
 
-
 
NC_004578  PSPTO_1744  initiation factor 2 subunit family  50.45 
 
 
358 aa  295  7e-79  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1052  aIF-2BI family translation initiation factor  49.7 
 
 
321 aa  293  4e-78  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>