241 homologs were found in PanDaTox collection
for query gene Gbem_3646 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_3753  translation initiation factor, aIF-2BI family  98.84 
 
 
346 aa  698    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3646  translation initiation factor, aIF-2BI family  100 
 
 
346 aa  704    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4322  aIF-2BI family translation initiation factor  81.21 
 
 
346 aa  595  1e-169  Geobacter uraniireducens Rf4  Bacteria  normal  0.394096  n/a   
 
 
-
 
NC_007517  Gmet_0072  translation initiation factor 2B subunit I  78.49 
 
 
346 aa  562  1.0000000000000001e-159  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.25912 
 
 
-
 
NC_002939  GSU3379  aIF-2BI family translation initiation factor  77.03 
 
 
346 aa  559  1e-158  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3596  translation initiation factor, aIF-2BI family  78.43 
 
 
346 aa  551  1e-156  Geobacter lovleyi SZ  Bacteria  normal  0.82629  n/a   
 
 
-
 
NC_008609  Ppro_0510  aIF-2BI family translation initiation factor  75.43 
 
 
346 aa  544  1e-154  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2170  aIF-2BI family translation initiation factor  65.01 
 
 
344 aa  409  1e-113  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1175  translation initiation factor 2B subunit I  57.48 
 
 
354 aa  402  1e-111  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0621  translation initiation factor 2B subunit I  58.7 
 
 
342 aa  404  1e-111  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0997628  n/a   
 
 
-
 
NC_009616  Tmel_0254  aIF-2BI family translation initiation factor  59 
 
 
346 aa  395  1e-109  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0016  aIF-2BI family translation initiation factor  58.55 
 
 
343 aa  397  1e-109  Thermotoga sp. RQ2  Bacteria  normal  0.570831  n/a   
 
 
-
 
NC_009718  Fnod_1519  aIF-2BI family translation initiation factor  58.06 
 
 
350 aa  396  1e-109  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.889993  n/a   
 
 
-
 
NC_009486  Tpet_0016  aIF-2BI family translation initiation factor  58.55 
 
 
343 aa  397  1e-109  Thermotoga petrophila RKU-1  Bacteria  normal  0.339634  n/a   
 
 
-
 
NC_012034  Athe_1360  translation initiation factor, aIF-2BI family  55.59 
 
 
342 aa  383  1e-105  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0559648  n/a   
 
 
-
 
NC_010003  Pmob_0810  aIF-2BI family translation initiation factor  56.21 
 
 
349 aa  369  1e-101  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3749  putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase  56.33 
 
 
354 aa  366  1e-100  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3560  translation initiation factor, aIF-2BI family  55.91 
 
 
357 aa  367  1e-100  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4687  methylthioribose-1-phosphate isomerase  55.62 
 
 
350 aa  362  7.0000000000000005e-99  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_2078  methylthioribose-1-phosphate isomerase  52.91 
 
 
353 aa  349  4e-95  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.424406 
 
 
-
 
NC_009972  Haur_2349  aIF-2BI family translation initiation factor  51.93 
 
 
358 aa  349  5e-95  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.944221  n/a   
 
 
-
 
NC_014248  Aazo_1643  translation initiation factor  56.27 
 
 
344 aa  348  5e-95  'Nostoc azollae' 0708  Bacteria  normal  0.226672  n/a   
 
 
-
 
NC_013440  Hoch_6765  translation initiation factor, aIF-2BI family  52.26 
 
 
369 aa  349  5e-95  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1186  translation initiation factor, aIF-2BI family  56.6 
 
 
345 aa  347  2e-94  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000144196  normal  0.031954 
 
 
-
 
NC_010320  Teth514_1881  aIF-2BI family translation initiation factor  53.24 
 
 
345 aa  346  3e-94  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3544  methylthioribose-1-phosphate isomerase  54.6 
 
 
347 aa  345  4e-94  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0518  aIF-2BI family translation initiation factor  54.98 
 
 
334 aa  345  5e-94  Dehalococcoides ethenogenes 195  Bacteria  normal  0.294825  n/a   
 
 
-
 
NC_013385  Adeg_0964  translation initiation factor, aIF-2BI family  55.15 
 
 
351 aa  345  6e-94  Ammonifex degensii KC4  Bacteria  normal  0.518904  n/a   
 
 
-
 
NC_009253  Dred_2064  aIF-2BI family translation initiation factor  53.85 
 
 
346 aa  345  6e-94  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000777983  n/a   
 
 
-
 
NC_012793  GWCH70_0846  methylthioribose-1-phosphate isomerase  51.9 
 
 
356 aa  344  1e-93  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_459  methylthioribose-1-phosphate isomerase  54.38 
 
 
332 aa  344  1e-93  Dehalococcoides sp. VS  Bacteria  normal  0.14852  n/a   
 
 
-
 
NC_011830  Dhaf_3765  translation initiation factor, aIF-2BI family  57.02 
 
 
345 aa  343  2e-93  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0692423  n/a   
 
 
-
 
NC_011884  Cyan7425_3816  methylthioribose-1-phosphate isomerase  56.46 
 
 
350 aa  343  2e-93  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.732544 
 
 
-
 
NC_009523  RoseRS_0485  aIF-2BI family translation initiation factor  54.07 
 
 
353 aa  342  4e-93  Roseiflexus sp. RS-1  Bacteria  normal  0.646058  normal 
 
 
-
 
NC_011899  Hore_18480  putative translation initiation factor, aIF-2BI family  52.49 
 
 
355 aa  341  1e-92  Halothermothrix orenii H 168  Bacteria  normal  0.0224403  n/a   
 
 
-
 
NC_009675  Anae109_4334  eIF-2B alpha/beta/delta-related uncharacterized protein  55.99 
 
 
337 aa  340  2e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0332  methylthioribose-1-phosphate isomerase  50 
 
 
348 aa  338  5.9999999999999996e-92  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0379  methylthioribose-1-phosphate isomerase  50 
 
 
348 aa  338  5.9999999999999996e-92  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0347  methylthioribose-1-phosphate isomerase  50 
 
 
347 aa  338  5.9999999999999996e-92  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0319  methylthioribose-1-phosphate isomerase  49.7 
 
 
347 aa  337  9.999999999999999e-92  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1381  translation initiation factor, aIF-2BI family  50.14 
 
 
362 aa  337  1.9999999999999998e-91  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.705402  n/a   
 
 
-
 
NC_008576  Mmc1_1944  translation initiation factor 2B subunit I  53.43 
 
 
352 aa  337  1.9999999999999998e-91  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00466755  normal  0.570212 
 
 
-
 
NC_010184  BcerKBAB4_0327  methylthioribose-1-phosphate isomerase  50.3 
 
 
348 aa  337  1.9999999999999998e-91  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0494  translation initiation factor 2B subunit I  53.17 
 
 
332 aa  337  1.9999999999999998e-91  Dehalococcoides sp. BAV1  Bacteria  normal  0.93452  n/a   
 
 
-
 
NC_009767  Rcas_0156  eIF-2B alpha/beta/delta-related uncharacterized protein  53.16 
 
 
354 aa  336  2.9999999999999997e-91  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.232234  normal 
 
 
-
 
NC_005957  BT9727_0316  methylthioribose-1-phosphate isomerase  49.7 
 
 
348 aa  336  3.9999999999999995e-91  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0441  methylthioribose-1-phosphate isomerase  49.7 
 
 
348 aa  336  3.9999999999999995e-91  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0893  translation initiation factor, putative, aIF-2BI family  52.49 
 
 
350 aa  335  5.999999999999999e-91  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.592347  n/a   
 
 
-
 
NC_011206  Lferr_1015  translation initiation factor, aIF-2BI family  52.49 
 
 
350 aa  335  5.999999999999999e-91  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.253315  unclonable  0.0000000000388932 
 
 
-
 
NC_010424  Daud_0648  aIF-2BI family translation initiation factor  52.89 
 
 
348 aa  335  5.999999999999999e-91  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.674044  n/a   
 
 
-
 
NC_010085  Nmar_0169  aIF-2BI family translation initiation factor  49.86 
 
 
345 aa  335  7.999999999999999e-91  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00178496 
 
 
-
 
NC_011772  BCG9842_B4924  methylthioribose-1-phosphate isomerase  49.41 
 
 
348 aa  334  1e-90  Bacillus cereus G9842  Bacteria  normal  0.64519  normal 
 
 
-
 
NC_010718  Nther_0419  translation initiation factor 2B subunit I family (IF-2BI)  49.12 
 
 
347 aa  333  3e-90  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.04546  normal 
 
 
-
 
NC_011725  BCB4264_A0394  methylthioribose-1-phosphate isomerase  49.7 
 
 
348 aa  332  6e-90  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2235  translation initiation factor, aIF-2BI family  53.05 
 
 
350 aa  331  1e-89  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_3396  methylthioribose-1-phosphate isomerase  53.5 
 
 
349 aa  331  1e-89  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2717  methylthioribose-1-phosphate isomerase  53.5 
 
 
349 aa  331  1e-89  Cyanothece sp. PCC 8802  Bacteria  normal  0.143544  normal  0.136837 
 
 
-
 
NC_007519  Dde_0076  translation initiation factor 2B subunit I  53.94 
 
 
355 aa  330  2e-89  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2877  eIF-2B alpha/beta/delta-related uncharacterized proteins  53.19 
 
 
350 aa  330  2e-89  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS3942  methylthioribose-1-phosphate isomerase  48.98 
 
 
351 aa  323  3e-87  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4251  methylthioribose-1-phosphate isomerase  48.98 
 
 
351 aa  323  3e-87  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3789  methylthioribose-1-phosphate isomerase  48.69 
 
 
351 aa  323  4e-87  Bacillus cereus E33L  Bacteria  normal  0.700016  n/a   
 
 
-
 
NC_013411  GYMC61_1741  methylthioribose-1-phosphate isomerase  51.02 
 
 
355 aa  323  4e-87  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A4159  methylthioribose-1-phosphate isomerase  48.4 
 
 
351 aa  322  5e-87  Bacillus cereus AH187  Bacteria  normal  0.109098  n/a   
 
 
-
 
NC_011773  BCAH820_4053  methylthioribose-1-phosphate isomerase  48.69 
 
 
351 aa  322  7e-87  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011901  Tgr7_1534  translation initiation factor, aIF-2BI family  51.9 
 
 
348 aa  322  7e-87  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3774  methylthioribose-1-phosphate isomerase  48.69 
 
 
351 aa  321  9.999999999999999e-87  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4098  methylthioribose-1-phosphate isomerase  48.4 
 
 
351 aa  320  1.9999999999999998e-86  Bacillus cereus ATCC 10987  Bacteria  normal  0.463174  n/a   
 
 
-
 
NC_011725  BCB4264_A4139  methylthioribose-1-phosphate isomerase  48.1 
 
 
353 aa  320  1.9999999999999998e-86  Bacillus cereus B4264  Bacteria  normal  0.196624  n/a   
 
 
-
 
NC_011883  Ddes_2312  translation initiation factor, aIF-2BI family  55.25 
 
 
378 aa  320  1.9999999999999998e-86  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1992  translation initiation factor 2B subunit I  48.4 
 
 
348 aa  320  3e-86  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.337411 
 
 
-
 
NC_007644  Moth_0703  translation initiation factor 2B subunit I  52.34 
 
 
351 aa  319  3.9999999999999996e-86  Moorella thermoacetica ATCC 39073  Bacteria  normal  hitchhiker  0.000787843 
 
 
-
 
NC_011661  Dtur_0929  translation initiation factor, aIF-2BI family  48.68 
 
 
344 aa  319  3.9999999999999996e-86  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.119435  n/a   
 
 
-
 
NC_011898  Ccel_1289  methylthioribose-1-phosphate isomerase  52.69 
 
 
364 aa  318  7e-86  Clostridium cellulolyticum H10  Bacteria  normal  0.0889723  n/a   
 
 
-
 
NC_011145  AnaeK_4317  translation initiation factor, aIF-2BI family  53.94 
 
 
339 aa  317  2e-85  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0676  translation initiation factor, aIF-2BI family  49.42 
 
 
339 aa  317  2e-85  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0103604  n/a   
 
 
-
 
NC_011891  A2cp1_4339  translation initiation factor, aIF-2BI family  53.94 
 
 
339 aa  317  2e-85  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3861  methylthioribose-1-phosphate isomerase  48.1 
 
 
349 aa  315  8e-85  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.583783  n/a   
 
 
-
 
NC_007760  Adeh_4186  translation initiation factor 2B subunit I  54.65 
 
 
339 aa  315  9.999999999999999e-85  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1099  methylthioribose-1-phosphate isomerase  47.65 
 
 
353 aa  313  1.9999999999999998e-84  Bacillus cereus G9842  Bacteria  normal  normal  0.767768 
 
 
-
 
NC_008346  Swol_0779  S-methyl-5-thioribose-1-phosphate isomerase  48.82 
 
 
346 aa  313  1.9999999999999998e-84  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.404257  n/a   
 
 
-
 
NC_013223  Dret_0503  translation initiation factor, aIF-2BI family  49.12 
 
 
350 aa  311  7.999999999999999e-84  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0191  translation initiation factor, aIF-2BI family  50.89 
 
 
348 aa  310  2e-83  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1203  translation initiation factor, aIF-2BI family  47.7 
 
 
358 aa  311  2e-83  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.178333 
 
 
-
 
NC_008554  Sfum_1706  eIF-2B alpha/beta/delta-related uncharacterized proteins  51.49 
 
 
349 aa  310  2e-83  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.307709  normal  0.360385 
 
 
-
 
NC_008740  Maqu_2493  eIF-2B alpha/beta/delta-related uncharacterized protein  50.29 
 
 
351 aa  308  5.9999999999999995e-83  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2613  translation initiation factor, aIF-2BI family  45.61 
 
 
349 aa  308  1.0000000000000001e-82  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2033  aIF-2BI family translation initiation factor  49.25 
 
 
354 aa  308  1.0000000000000001e-82  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0639  aIF-2BI family translation initiation factor  51.95 
 
 
372 aa  307  2.0000000000000002e-82  Petrotoga mobilis SJ95  Bacteria  normal  0.249987  n/a   
 
 
-
 
NC_008463  PA14_23250  methylthioribose-1-phosphate isomerase  51.47 
 
 
358 aa  306  3e-82  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0078361 
 
 
-
 
NC_009135  MmarC5_1791  translation initiation factor 2B subunit I  50.45 
 
 
321 aa  306  3e-82  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1960  methylthioribose-1-phosphate isomerase  51.75 
 
 
358 aa  305  8.000000000000001e-82  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3648  methylthioribose-1-phosphate isomerase  49.71 
 
 
365 aa  303  2.0000000000000002e-81  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.295966  normal  0.479816 
 
 
-
 
NC_004578  PSPTO_1744  initiation factor 2 subunit family  50.59 
 
 
358 aa  303  3.0000000000000004e-81  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0027  aIF-2BI family translation initiation factor  50.59 
 
 
337 aa  302  6.000000000000001e-81  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0927  aIF-2BI family translation initiation factor  49.25 
 
 
323 aa  302  7.000000000000001e-81  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0865  aIF-2BI family translation initiation factor  50.45 
 
 
321 aa  301  9e-81  Methanococcus maripaludis C7  Archaea  normal  normal  0.0114166 
 
 
-
 
NC_011126  HY04AAS1_0595  translation initiation factor, aIF-2BI family  46.33 
 
 
328 aa  301  1e-80  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0999  aIF-2BI family translation initiation factor  48.7 
 
 
327 aa  300  3e-80  Meiothermus ruber DSM 1279  Bacteria  normal  0.260098  normal 
 
 
-
 
NC_012560  Avin_15800  methylthioribose-1-phosphate isomerase  51.19 
 
 
358 aa  298  1e-79  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
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