16 homologs were found in PanDaTox collection
for query gene Amir_6356 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_6356  transcriptional regulator, XRE family  100 
 
 
406 aa  823    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3948  hypothetical protein  39.81 
 
 
419 aa  226  7e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0051  hypothetical protein  26.82 
 
 
565 aa  66.2  0.000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3226  hypothetical protein  24.54 
 
 
443 aa  57.8  0.0000003  Frankia sp. CcI3  Bacteria  normal  normal  0.407522 
 
 
-
 
NC_009921  Franean1_1397  hypothetical protein  24.01 
 
 
443 aa  58.2  0.0000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7276  hypothetical protein  29.29 
 
 
475 aa  57  0.0000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.209812  normal  0.16745 
 
 
-
 
NC_009921  Franean1_6314  helix-turn-helix domain-containing protein  26.04 
 
 
443 aa  53.5  0.000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1022  XRE family transcriptional regulator  26.06 
 
 
441 aa  52.4  0.00002  Frankia sp. CcI3  Bacteria  normal  0.842716  normal  0.936661 
 
 
-
 
NC_009921  Franean1_5545  XRE family transcriptional regulator  24.48 
 
 
443 aa  52  0.00002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3931  hypothetical protein  27 
 
 
445 aa  50.8  0.00004  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00536629  normal  0.131737 
 
 
-
 
NC_009051  Memar_1291  XRE family transcriptional regulator  43.66 
 
 
184 aa  49.7  0.00009  Methanoculleus marisnigri JR1  Archaea  normal  0.0600797  n/a   
 
 
-
 
NC_013510  Tcur_2729  transcriptional regulator, XRE family  45.76 
 
 
431 aa  47.4  0.0004  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000809201  n/a   
 
 
-
 
NC_013510  Tcur_0163  hypothetical protein  25.65 
 
 
505 aa  46.6  0.0008  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0731  helix-hairpin-helix DNA-binding motif-containing protein  41.79 
 
 
418 aa  46.2  0.001  Thermobifida fusca YX  Bacteria  decreased coverage  0.00340964  n/a   
 
 
-
 
NC_013595  Sros_2542  putative transcriptional regulator, XRE family  40.68 
 
 
277 aa  45.1  0.002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.259314  normal 
 
 
-
 
NC_014210  Ndas_4136  transcriptional regulator, XRE family  28.67 
 
 
259 aa  43.1  0.009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
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