43 homologs were found in PanDaTox collection
for query gene Sbal223_3459 on replicon NC_011663
Organism: Shewanella baltica OS223



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011663  Sbal223_3459  transcriptional regulator, CadC  100 
 
 
249 aa  512  1e-144  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0833  transcriptional regulator, CadC  100 
 
 
249 aa  512  1e-144  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3653  transcriptional regulator, CadC  98.39 
 
 
249 aa  504  9.999999999999999e-143  Shewanella baltica OS195  Bacteria  normal  0.409424  normal 
 
 
-
 
NC_009665  Shew185_3534  transcriptional regulator, CadC  98.39 
 
 
249 aa  503  1e-141  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3240  lysine decarboxylase transcriptional regulator, CadC  65.99 
 
 
247 aa  346  2e-94  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0783  lysine decarboxylase transcriptional regulator, CadC  65.99 
 
 
247 aa  345  4e-94  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3343  lysine decarboxylase transcriptional regulator, CadC  65.99 
 
 
247 aa  343  1e-93  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0940  transcriptional regulator-related protein  63.56 
 
 
247 aa  337  8e-92  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0880  transcriptional regulator, CadC  65.18 
 
 
247 aa  333  2e-90  Shewanella putrefaciens CN-32  Bacteria  normal  0.102623  n/a   
 
 
-
 
NC_009901  Spea_3438  winged helix family two component response transcriptional regulator  46.59 
 
 
250 aa  219  3.9999999999999997e-56  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3632  response regulator receiver protein  46.18 
 
 
265 aa  218  8.999999999999998e-56  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2749  putative transcriptional regulator, CadC  46.61 
 
 
251 aa  202  5e-51  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0883  response regulator receiver protein  43.32 
 
 
244 aa  201  7e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0760  response regulator receiver protein  41.76 
 
 
273 aa  198  7.999999999999999e-50  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0885  transcriptional regulator, CadC  45.6 
 
 
246 aa  192  3e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0653  hypothetical protein  26.98 
 
 
248 aa  92  7e-18  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00719508  n/a   
 
 
-
 
NC_010506  Swoo_0881  putative transcriptional regulator, CadC  26.77 
 
 
246 aa  80.5  0.00000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0879  hypothetical protein  26.64 
 
 
248 aa  79.3  0.00000000000005  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00268947  normal 
 
 
-
 
NC_004347  SO_0936  transcriptional regulator  25 
 
 
248 aa  75.5  0.0000000000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3347  transcriptional regulator  24.9 
 
 
249 aa  67.8  0.0000000002  Shewanella sp. ANA-3  Bacteria  normal  0.730311  normal 
 
 
-
 
NC_009901  Spea_0793  putative transcriptional regulator, CadC  23.89 
 
 
248 aa  66.6  0.0000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.790637  n/a   
 
 
-
 
NC_008322  Shewmr7_3244  response regulator receiver protein  22.8 
 
 
249 aa  65.5  0.0000000008  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0779  response regulator receiver protein  22.8 
 
 
249 aa  63.2  0.000000004  Shewanella sp. MR-4  Bacteria  normal  0.365042  normal 
 
 
-
 
NC_009092  Shew_0757  putative transcriptional regulator, CadC  38.14 
 
 
151 aa  57.8  0.0000002  Shewanella loihica PV-4  Bacteria  normal  0.19634  normal 
 
 
-
 
NC_009831  Ssed_3465  DNA-binding winged-HTH domain-containing protein  30.54 
 
 
435 aa  45.4  0.0008  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.817886 
 
 
-
 
NC_010498  EcSMS35_4023  invasion protein regulator  33.33 
 
 
565 aa  44.7  0.002  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.876946 
 
 
-
 
NC_007643  Rru_A2225  two component transcriptional regulator  33.67 
 
 
246 aa  43.9  0.002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3716  response regulator receiver:transcriptional regulatory protein, C-terminal  34.09 
 
 
247 aa  43.9  0.003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.422774  normal  0.0121745 
 
 
-
 
NC_004578  PSPTO_1672  DNA-binding response regulator  34.09 
 
 
247 aa  43.9  0.003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6123  transcriptional regulator  38.46 
 
 
493 aa  43.5  0.003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4245  two component transcriptional regulator  33.71 
 
 
240 aa  43.5  0.003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0492398  normal 
 
 
-
 
NC_008544  Bcen2424_6521  transcriptional regulator  38.46 
 
 
493 aa  43.1  0.004  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0681996  normal 
 
 
-
 
NC_008060  Bcen_1308  transcriptional regulator  38.46 
 
 
493 aa  43.1  0.004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1255  two component transcriptional regulator, winged helix family  28.85 
 
 
246 aa  42.7  0.005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2223  DNA-binding response regulator  36.11 
 
 
230 aa  43.1  0.005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.375792  n/a   
 
 
-
 
NC_006368  lpp1393  transcriptional regulatory protein CpxR  37.84 
 
 
226 aa  42.7  0.005  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1603  transcriptional regulatory protein CpxR  37.84 
 
 
226 aa  42.7  0.005  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2032  response regulator receiver:transcriptional regulatory protein, C-terminal  36.11 
 
 
259 aa  42.7  0.005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2418  two component transcriptional regulator  38.89 
 
 
237 aa  42.7  0.005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_3477  two component transcriptional regulator  32.91 
 
 
261 aa  42.7  0.006  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2572  two component transcriptional regulator  37.18 
 
 
230 aa  42.4  0.007  Pseudomonas putida GB-1  Bacteria  normal  normal  0.186253 
 
 
-
 
NC_007777  Francci3_0089  response regulator receiver protein  31.33 
 
 
171 aa  42.4  0.008  Frankia sp. CcI3  Bacteria  normal  0.68554  normal 
 
 
-
 
NC_008700  Sama_3303  response regulator receiver protein  40 
 
 
224 aa  42  0.01  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.206004 
 
 
-
 
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