34 homologs were found in PanDaTox collection
for query gene SbBS512_E1072 on replicon NC_010658
Organism: Shigella boydii CDC 3083-94



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010658  SbBS512_E1072  colanic acid capsular biosynthesis activation protein A  100 
 
 		 203 aa  418  1e-116  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000000000307954  n/a   
 
 
-
 
NC_010498  EcSMS35_1233  colanic acid capsular biosynthesis activation protein A  97.52 
 
 		 207 aa  400  1e-111  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000000132181  normal  1 
 
 
-
 
NC_009801  EcE24377A_2184  colanic acid capsular biosynthesis activation protein A  97.52 
 
 		 207 aa  400  1e-111  Escherichia coli E24377A  Bacteria  hitchhiker  0.00000000000916169  n/a   
 
 
-
 
NC_010468  EcolC_1691  LuxR family transcriptional regulator  97.03 
 
 		 207 aa  397  9.999999999999999e-111  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000000265916  hitchhiker  0.00232643 
 
 
-
 
NC_009800  EcHS_A2051  colanic acid capsular biosynthesis activation protein A  97.03 
 
 		 207 aa  399  9.999999999999999e-111  Escherichia coli HS  Bacteria  decreased coverage  4.74459e-16  n/a   
 
 
-
 
CP001637  EcDH1_1697  transcriptional regulator, LuxR family  96.53 
 
 		 207 aa  394  1e-109  Escherichia coli DH1  Bacteria  hitchhiker  0.000000000115016  n/a   
 
 
-
 
NC_011353  ECH74115_2728  colanic acid capsular biosynthesis activation protein A  96.53 
 
 		 207 aa  394  1e-109  Escherichia coli O157:H7 str. EC4115  Bacteria  unclonable  0.00000000830515  normal  0.480733 
 
 
-
 
NC_011149  SeAg_B1137  colanic acid capsular biosynthesis activation protein A  86.14 
 
 		 207 aa  356  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00000000192642  n/a   
 
 
-
 
NC_011080  SNSL254_A2145  colanic acid capsular biosynthesis activation protein A  85.64 
 
 		 207 aa  355  1.9999999999999998e-97  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000312117  hitchhiker  0.00586911 
 
 
-
 
NC_011205  SeD_A1259  colanic acid capsular biosynthesis activation protein A  85.64 
 
 		 207 aa  355  1.9999999999999998e-97  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0272351  normal  0.751941 
 
 
-
 
NC_011083  SeHA_C2199  colanic acid capsular biosynthesis activation protein A  85.64 
 
 		 207 aa  355  1.9999999999999998e-97  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.283228  normal  0.62751 
 
 
-
 
NC_011094  SeSA_A2141  colanic acid capsular biosynthesis activation protein A  85.64 
 
 		 207 aa  355  2.9999999999999997e-97  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  hitchhiker  0.000944438  normal  0.224442 
 
 
-
 
NC_009436  Ent638_2542  response regulator receiver protein  83.66 
 
 		 207 aa  350  1e-95  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000537034  normal  1 
 
 
-
 
NC_009832  Spro_3050  LuxR family transcriptional regulator  65.85 
 
 		 209 aa  271  5.000000000000001e-72  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009436  Ent638_0336  two component LuxR family transcriptional regulator  25.14 
 
 		 199 aa  62.8  0.000000004  Enterobacter sp. 638  Bacteria  normal  1  unclonable  0.00000245981 
 
 
-
 
NC_010159  YpAngola_A1707  LuxR family transcriptional regulator  23.15 
 
 		 204 aa  52  0.000006  Yersinia pestis Angola  Bacteria  normal  0.0182424  hitchhiker  0.000162083 
 
 
-
 
NC_009708  YpsIP31758_1563  LuxR family transcriptional regulator  24.34 
 
 		 194 aa  51.6  0.000008  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.241768  n/a   
 
 
-
 
NC_010465  YPK_1671  LuxR family transcriptional regulator  24.34 
 
 		 194 aa  51.6  0.000008  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A2151  DNA-binding response regulator  23.91 
 
 		 214 aa  43.9  0.001  Burkholderia pseudomallei 668  Bacteria  normal  0.639034  n/a   
 
 
-
 
NC_007498  Pcar_0664  putative response regulator protein  31.03 
 
 		 508 aa  44.3  0.001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A0766  DNA-binding response regulator  23.91 
 
 		 214 aa  43.9  0.001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.261512  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2062  LuxR family DNA-binding response regulator  23.91 
 
 		 214 aa  43.9  0.001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0947149  n/a   
 
 
-
 
NC_013165  Shel_16610  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.46 
 
 		 491 aa  43.9  0.002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0119595  normal  0.714327 
 
 
-
 
NC_009832  Spro_1891  LuxR family transcriptional regulator  18.23 
 
 		 208 aa  43.5  0.002  Serratia proteamaculans 568  Bacteria  normal  1  hitchhiker  0.000479557 
 
 
-
 
NC_008835  BMA10229_2085  DNA-binding response regulator  23.91 
 
 		 264 aa  43.9  0.002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.844485  n/a   
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  37.5 
 
 		 214 aa  43.5  0.002  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_007435  BURPS1710b_A0560  DNA-binding response regulator  23.91 
 
 		 223 aa  43.9  0.002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0224831  n/a   
 
 
-
 
NC_006349  BMAA1518.1  DNA-binding response regulator  23.91 
 
 		 223 aa  43.9  0.002  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.000399536  n/a   
 
 
-
 
NC_013132  Cpin_3979  two component transcriptional regulator, LuxR family  35 
 
 		 220 aa  42.4  0.004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487116  normal  0.704163 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  29.59 
 
 		 216 aa  42.4  0.005  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal  1 
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  31.63 
 
 		 216 aa  42.4  0.005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  23.74 
 
 		 220 aa  42  0.007  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_010682  Rpic_3357  two component transcriptional regulator, LuxR family  21.17 
 
 		 222 aa  41.6  0.009  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_4335  two component LuxR family transcriptional regulator  33.77 
 
 		 194 aa  41.6  0.009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
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