39 homologs were found in PanDaTox collection
for query gene Rpic12D_4404 on replicon NC_012857
Organism: Ralstonia pickettii 12D



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010678  Rpic_4294  hypothetical protein  100 
 
 
89 aa  184  4e-46  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4404  hypothetical protein  100 
 
 
89 aa  184  4e-46  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS02370  hypothetical protein  72.73 
 
 
83 aa  128  2.0000000000000002e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.14298  normal  0.0406002 
 
 
-
 
NC_010682  Rpic_1142  histone family protein nucleoid-structuring protein H-NS  60.76 
 
 
95 aa  93.2  1e-18  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3959  hypothetical protein  47.57 
 
 
108 aa  88.2  3e-17  Ralstonia eutropha JMP134  Bacteria  normal  0.0572114  n/a   
 
 
-
 
NC_012855  Rpic12D_5064  hypothetical protein  50.63 
 
 
95 aa  84.3  5e-16  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4462  histone-like nucleoid-structuring protein H-NS  42.27 
 
 
99 aa  78.6  0.00000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.168905  normal  0.0423453 
 
 
-
 
NC_007336  Reut_C6348  hypothetical protein  55.7 
 
 
83 aa  79  0.00000000000002  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00180642  n/a   
 
 
-
 
NC_007336  Reut_C6383  hypothetical protein  53.01 
 
 
91 aa  75.5  0.0000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.621443  n/a   
 
 
-
 
NC_007347  Reut_A1172  putative DNA-binding protein H-NS  52.44 
 
 
122 aa  72.8  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3892  hypothetical protein  44.3 
 
 
84 aa  68.6  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2777  hypothetical protein  39.24 
 
 
87 aa  62  0.000000003  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000199644  normal 
 
 
-
 
NC_010623  Bphy_3930  hypothetical protein  39.24 
 
 
85 aa  60.5  0.000000008  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4222  hypothetical protein  39.51 
 
 
108 aa  60.1  0.000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.804885  normal 
 
 
-
 
NC_007952  Bxe_B1018  hypothetical protein  36.59 
 
 
110 aa  60.1  0.00000001  Burkholderia xenovorans LB400  Bacteria  normal  0.0697598  normal  0.0957494 
 
 
-
 
NC_010676  Bphyt_5701  hypothetical protein  37.04 
 
 
108 aa  59.3  0.00000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6773  histone family protein nucleoid-structuring protein H-NS  37.04 
 
 
112 aa  57.4  0.00000006  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.00017117  normal  0.0671695 
 
 
-
 
NC_010623  Bphy_4587  histone family protein nucleoid-structuring protein H-NS  35.37 
 
 
112 aa  57.4  0.00000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.918729 
 
 
-
 
NC_010676  Bphyt_6763  hypothetical protein  39.74 
 
 
87 aa  56.6  0.0000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0430903  normal  0.248334 
 
 
-
 
NC_007951  Bxe_A2592  hypothetical protein  40.54 
 
 
97 aa  53.1  0.000001  Burkholderia xenovorans LB400  Bacteria  normal  0.658103  normal 
 
 
-
 
NC_010622  Bphy_2172  histone family protein nucleoid-structuring protein H-NS  34.57 
 
 
108 aa  52.8  0.000002  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00000970391 
 
 
-
 
NC_003296  RS02604  putative HNS-like transcription regulator protein  37.18 
 
 
102 aa  45.4  0.0002  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00414449  normal  0.0842767 
 
 
-
 
NC_010506  Swoo_3237  histone family protein nucleoid-structuring protein H-NS  32.05 
 
 
131 aa  45.4  0.0002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.602482 
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  31.58 
 
 
102 aa  42.4  0.002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_009438  Sputcn32_2512  histone family protein nucleoid-structuring protein H-NS  30.86 
 
 
130 aa  41.6  0.003  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00123836  n/a   
 
 
-
 
NC_010682  Rpic_1730  histone family protein nucleoid-structuring protein H-NS  34.67 
 
 
72 aa  42  0.003  Ralstonia pickettii 12J  Bacteria  normal  0.386763  normal  0.64236 
 
 
-
 
NC_008577  Shewana3_1404  histone family protein nucleoid-structuring protein H-NS  32.53 
 
 
130 aa  41.6  0.003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000773951  normal  0.9865 
 
 
-
 
NC_008321  Shewmr4_1351  histone family protein nucleoid-structuring protein H-NS  31.76 
 
 
130 aa  42  0.003  Shewanella sp. MR-4  Bacteria  normal  0.0110439  hitchhiker  0.00767889 
 
 
-
 
NC_009997  Sbal195_2996  histone family protein nucleoid-structuring protein H-NS  29.49 
 
 
130 aa  41.6  0.004  Shewanella baltica OS195  Bacteria  normal  0.18601  normal 
 
 
-
 
NC_011663  Sbal223_1510  histone family protein nucleoid-structuring protein H-NS  29.49 
 
 
130 aa  41.6  0.004  Shewanella baltica OS223  Bacteria  decreased coverage  0.000161891  normal 
 
 
-
 
NC_008322  Shewmr7_1416  histone family protein nucleoid-structuring protein H-NS  32.53 
 
 
130 aa  41.6  0.004  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00233677  normal  0.422691 
 
 
-
 
NC_009052  Sbal_2848  histone family protein nucleoid-structuring protein H-NS  29.49 
 
 
130 aa  41.6  0.004  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000899352  n/a   
 
 
-
 
NC_009665  Shew185_2867  histone family protein nucleoid-structuring protein H-NS  29.49 
 
 
130 aa  41.6  0.004  Shewanella baltica OS185  Bacteria  hitchhiker  0.00308675  n/a   
 
 
-
 
NC_007948  Bpro_3984  histone-like nucleoid-structuring protein H-NS  28.92 
 
 
117 aa  40.8  0.006  Polaromonas sp. JS666  Bacteria  normal  0.49889  normal  0.888803 
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  32.93 
 
 
102 aa  40.8  0.006  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_007954  Sden_2540  histone-like nucleoid-structuring protein H-NS  26.92 
 
 
135 aa  40.4  0.009  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.000000233995  n/a   
 
 
-
 
NC_011060  Ppha_1064  histone-like nucleoid-structuring protein H-NS  25.32 
 
 
101 aa  40.4  0.009  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012849  Rpic12D_5155  histone family protein nucleoid-structuring protein H-NS  34.67 
 
 
97 aa  40.4  0.009  Ralstonia pickettii 12D  Bacteria  normal  0.336859  normal  0.425922 
 
 
-
 
NC_011353  ECH74115_5080  Ler  30.77 
 
 
123 aa  40  0.01  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0343561 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>