34 homologs were found in PanDaTox collection
for query gene Pput_R0047 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_010501  PputW619_R0058    100 
 
 		 117 bp  230  6e-59  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  90.48 
 
 		 117 bp  129  2.0000000000000002e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
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NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  90.43 
 
 		 118 bp  115  3e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  89.11 
 
 		 117 bp  113  1.0000000000000001e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  86.32 
 
 		 98 bp  85.7  0.000000000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 105 bp  63.9  0.000000008  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009486  Tpet_R0052  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 107 bp  56  0.000002  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 117 bp  52  0.00003  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
-
 
NC_010003  Pmob_R0041  SRP RNA; RNA component of signal recognitionparticle  96.55 
 
 		 101 bp  50.1  0.0001  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_R0084  SRP RNA  91.89 
 
 		 116 bp  50.1  0.0001  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000267785  normal  0.896198 
 
 
-
 
NC_008789  Hhal_R0005  SRP RNA  84.72 
 
 		 118 bp  48.1  0.0005  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008819  NATL1_ffsVIMSS1309407  4.5S RNA component of the signal recognition particle (SRP)  93.75 
 
 		 97 bp  48.1  0.0005  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.42344  normal  1 
 
 
-
 
NC_008025  Dgeo_R0056  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 106 bp  48.1  0.0005  Deinococcus geothermalis DSM 11300  Bacteria  hitchhiker  0.0000625085  normal  0.583061 
 
 
-
 
NC_008820  P9303_ffsVIMSS1309425  4.5S RNA component of the signal recognition particle (SRP)  96.3 
 
 		 97 bp  46.1  0.002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.172921 
 
 
-
 
NC_007516  Syncc9605_R0028  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 101 bp  46.1  0.002  Synechococcus sp. CC9605  Bacteria  normal  1  normal  0.0658959 
 
 
-
 
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 115 bp  46.1  0.002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  44.1  0.008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_011662  Tmz1t_R0010  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 		 106 bp  44.1  0.008  Thauera sp. MZ1T  Bacteria  normal  0.33139  n/a   
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  100 
 
 		 100 bp  44.1  0.008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_1918  sRNA  100 
 
 		 105 bp  44.1  0.008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
-
 
NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_009091  P9301_ffsVIMSS1309401  ffs 4.5S RNA component of the signal recognition particle (SRP)  93.33 
 
 		 81 bp  44.1  0.008  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  1  n/a   
 
 
-
 
NC_008816  A9601_ffsVIMSS1309389  4.5S RNA component of the signal recognition particle (SRP)  93.33 
 
 		 81 bp  44.1  0.008  Prochlorococcus marinus str. AS9601  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_R0042  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  44.1  0.008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.332893  normal  0.55167 
 
 
-
 
NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
-
 
NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 92 bp  44.1  0.008  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  93.33 
 
 		 104 bp  44.1  0.008  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_007577  PMT9312_R0034  SRP RNA  93.33 
 
 		 102 bp  44.1  0.008  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
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