14 homologs were found in PanDaTox collection
for query gene Tpet_R0052 on replicon NC_009486
Organism: Thermotoga petrophila RKU-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009486  Tpet_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 107 bp  212  1e-53  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
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NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  97.06 
 
 		 105 bp  178  2e-43  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
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NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 117 bp  56  0.000002  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
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NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 117 bp  56  0.000002  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
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NC_010501  PputW619_R0058    96.88 
 
 		 117 bp  56  0.000002  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
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NC_013165  Shel_02310  Bacterial signal recognition particle RNA  94.44 
 
 		 97 bp  56  0.000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.384516  normal  1 
 
 
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NC_013170  Ccur_01560  bacterial signal recognition particle RNA  94.29 
 
 		 97 bp  54  0.000007  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.916519  hitchhiker  0.00823643 
 
 
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NC_013204  Elen_R0015  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 109 bp  54  0.000007  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  0.712093 
 
 
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NC_008025  Dgeo_R0056  SRP RNA; RNA component of signal recognition particle  91.67 
 
 		 106 bp  48.1  0.0004  Deinococcus geothermalis DSM 11300  Bacteria  hitchhiker  0.0000625085  normal  0.583061 
 
 
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NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 117 bp  48.1  0.0004  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
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NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 118 bp  48.1  0.0004  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
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NC_010003  Pmob_R0041  SRP RNA; RNA component of signal recognitionparticle  93.75 
 
 		 101 bp  48.1  0.0004  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
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NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  93.75 
 
 		 98 bp  48.1  0.0004  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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NC_007498  Pcar_R0010    100 
 
 		 24 bp  44.1  0.007  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  1.22312e-19  n/a   
 
 
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