34 homologs were found in PanDaTox collection
for query gene Maqu_R0035 on replicon NC_008740
Organism: Marinobacter aquaeolei VT8



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
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NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  89.04 
 
 		 98 bp  81.8  0.00000000000004  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  97.67 
 
 		 118 bp  77.8  0.0000000000006  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
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NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  89.47 
 
 		 117 bp  65.9  0.000000002  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
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NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 105 bp  56  0.000002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
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NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  87.5 
 
 		 100 bp  56  0.000002  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
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NC_009727  CBUD_0669a  hypothetical protein  87.5 
 
 		 165 bp  56  0.000002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
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NC_008340  Mlg_R0042  SRP RNA; RNA component of signal recognition particle  89.58 
 
 		 118 bp  56  0.000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.332893  normal  0.55167 
 
 
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NC_011761  AFE_1917  Bacterial signal recognition particle RNA  96.77 
 
 		 100 bp  54  0.000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
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NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  96.77 
 
 		 119 bp  54  0.000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
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NC_011761  AFE_1918  sRNA  96.77 
 
 		 105 bp  54  0.000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_R0005  SRP RNA  96.77 
 
 		 118 bp  54  0.000008  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 117 bp  52  0.00003  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  87.04 
 
 		 118 bp  52  0.00003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_R0058    94.12 
 
 		 117 bp  52  0.00003  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 117 bp  52  0.00003  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_009486  Tpet_R0052  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 107 bp  48.1  0.0005  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  85.71 
 
 		 100 bp  48.1  0.0005  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
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NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  86.54 
 
 		 117 bp  48.1  0.0005  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  85.71 
 
 		 100 bp  48.1  0.0005  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 118 bp  46.1  0.002  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  93.55 
 
 		 118 bp  46.1  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
-
 
NC_009511  Swit_R0002  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Sphingomonas wittichii RW1  Bacteria  normal  0.0332603  normal  1 
 
 
-
 
NC_011365  Gdia_R0050  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 109 bp  44.1  0.008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.0253553 
 
 
-
 
NC_009484  Acry_R0038  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 106 bp  44.1  0.008  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_R0006  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0124002  normal  0.42637 
 
 
-
 
NC_009049  Rsph17029_R0039  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.183217 
 
 
-
 
NC_008686  Pden_R0031  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 102 bp  44.1  0.008  Paracoccus denitrificans PD1222  Bacteria  normal  0.0666652  normal  0.0491698 
 
 
-
 
NC_007643  Rru_AR0066  SRP RNA, 4.5S RNA  93.33 
 
 		 100 bp  44.1  0.008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.192792  n/a   
 
 
-
 
NC_007493  RSP_4343  SRP RNA, 4.5S RNA  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
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