44 homologs were found in PanDaTox collection
for query gene Lferr_R0056 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  236  1.0000000000000001e-60  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_011761  AFE_1918  sRNA  100 
 
 		 105 bp  208  2e-52  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
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NC_011761  AFE_1917  Bacterial signal recognition particle RNA  100 
 
 		 100 bp  198  2.0000000000000003e-49  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
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NC_008789  Hhal_R0005  SRP RNA  100 
 
 		 118 bp  73.8  0.000000000009  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
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NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  61.9  0.00000003  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  61.9  0.00000003  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  61.9  0.00000003  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_R0042  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  60  0.0000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.332893  normal  0.55167 
 
 
-
 
NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  96.97 
 
 		 118 bp  58  0.0000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
-
 
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  94.59 
 
 		 118 bp  58  0.0000005  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_013926  Aboo_R0005  SRP RNA; RNA component of signal recognition particle  96.77 
 
 		 307 bp  54  0.000008  Aciduliprofundum boonei T469  Archaea  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_R0005  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 109 bp  54  0.000008  Geobacter bemidjiensis Bem  Bacteria  normal  0.803178  n/a   
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  96.77 
 
 		 98 bp  54  0.000008  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  54  0.000008  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
-
 
NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  96.77 
 
 		 117 bp  54  0.000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
-
 
NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  82.56 
 
 		 117 bp  52  0.00003  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  82.56 
 
 		 115 bp  52  0.00003  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 118 bp  50.1  0.0001  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  96.55 
 
 		 165 bp  50.1  0.0001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  96.55 
 
 		 118 bp  50.1  0.0001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  82.72 
 
 		 117 bp  50.1  0.0001  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  96.55 
 
 		 100 bp  50.1  0.0001  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 116 bp  46.1  0.002  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  96.3 
 
 		 109 bp  46.1  0.002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  96.3 
 
 		 110 bp  46.1  0.002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 116 bp  46.1  0.002  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 118 bp  46.1  0.002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  96.3 
 
 		 109 bp  46.1  0.002  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 105 bp  46.1  0.002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 118 bp  46.1  0.002  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_010320  Teth514_R0006  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 120 bp  46.1  0.002  Thermoanaerobacter sp. X514  Bacteria  normal  0.0386858  n/a   
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 117 bp  46.1  0.002  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_008554  Sfum_R0010  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 94 bp  46.1  0.002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 116 bp  46.1  0.002  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 116 bp  46.1  0.002  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_012918  GM21_R0005  SRP RNA; RNA component of signal recognitionparti cle  91.43 
 
 		 109 bp  46.1  0.002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.3194600000000004e-26 
 
 
-
 
NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  86.27 
 
 		 116 bp  46.1  0.002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 117 bp  46.1  0.002  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  96.15 
 
 		 111 bp  44.1  0.008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_010501  PputW619_R0058    100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_009483  Gura_R0057  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 124 bp  44.1  0.008  Geobacter uraniireducens Rf4  Bacteria  normal  0.0673338  n/a   
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  96.15 
 
 		 112 bp  44.1  0.008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
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