25 homologs were found in PanDaTox collection
for query gene Mlg_R0042 on replicon NC_008340
Organism: Alkalilimnicola ehrlichii MLHE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008340  Mlg_R0042  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  234  4.0000000000000004e-60  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.332893  normal  0.55167 
 
 
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NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  86.67 
 
 		 118 bp  83.8  0.000000000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
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NC_008789  Hhal_R0005  SRP RNA  91.8 
 
 		 118 bp  73.8  0.000000000009  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
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NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  84.95 
 
 		 118 bp  73.8  0.000000000009  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
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NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  84.44 
 
 		 117 bp  67.9  0.0000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
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NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  83.87 
 
 		 98 bp  65.9  0.000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  60  0.0000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
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NC_011761  AFE_1917  Bacterial signal recognition particle RNA  100 
 
 		 100 bp  60  0.0000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
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NC_011761  AFE_1918  sRNA  100 
 
 		 105 bp  60  0.0000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
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NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  83.72 
 
 		 100 bp  60  0.0000001  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
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NC_009727  CBUD_0669a  hypothetical protein  83.72 
 
 		 165 bp  60  0.0000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
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NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  89.58 
 
 		 117 bp  56  0.000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
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NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  52  0.00003  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  52  0.00003  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
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NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  52  0.00003  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
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NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  52  0.00003  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
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NC_013889  TK90_R0044  SRP RNA; RNA component of signal recognition particle  82.14 
 
 		 119 bp  48.1  0.0005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0198539  normal  0.360014 
 
 
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NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  85.45 
 
 		 118 bp  46.1  0.002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
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NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  85.45 
 
 		 118 bp  46.1  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
-
 
NC_010501  PputW619_R0058    100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 105 bp  44.1  0.008  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
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NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
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NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.008  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
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NC_009483  Gura_R0057  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 124 bp  44.1  0.008  Geobacter uraniireducens Rf4  Bacteria  normal  0.0673338  n/a   
 
 
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NC_013926  Aboo_R0005  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Aciduliprofundum boonei T469  Archaea  normal  1  n/a   
 
 
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