47 homologs were found in PanDaTox collection
for query gene Sde_R0021 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 110 bp  218  2e-55  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  89.23 
 
 		 118 bp  73.8  0.000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  89.06 
 
 		 118 bp  71.9  0.00000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  69.9  0.0000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  69.9  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  100 
 
 		 100 bp  67.9  0.0000000005  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  100 
 
 		 165 bp  67.9  0.0000000005  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  65.9  0.000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  100 
 
 		 112 bp  65.9  0.000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 111 bp  65.9  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_009524  PsycPRwf_R0035  SRP RNA; RNA component of signal recognition particle  95.12 
 
 		 114 bp  65.9  0.000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.151839 
 
 
-
 
NC_009635  Maeo_R0035  SRP RNA; RNA component of signal recognition particle  97.14 
 
 		 308 bp  61.9  0.00000003  Methanococcus aeolicus Nankai-3  Archaea  normal  1  n/a   
 
 
-
 
NC_013889  TK90_R0044  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  60  0.0000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0198539  normal  0.360014 
 
 
-
 
NC_013926  Aboo_R0005  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 307 bp  58  0.0000005  Aciduliprofundum boonei T469  Archaea  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 307 bp  54  0.000007  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  82.76 
 
 		 118 bp  54  0.000007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
-
 
NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 307 bp  54  0.000007  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_008789  Hhal_R0005  SRP RNA  88.24 
 
 		 118 bp  54  0.000007  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 307 bp  54  0.000007  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_013522  Taci_R0008  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 114 bp  52  0.00003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0000000137936  n/a   
 
 
-
 
NC_013501  Rmar_R0038  SRP RNA; RNA component of signal recognitionparti cle  94.12 
 
 		 108 bp  52  0.00003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.263697  n/a   
 
 
-
 
NC_008009  Acid345_R0021  SRP RNA; RNA component of signal recognition particle  92.11 
 
 		 114 bp  52  0.00003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012034  Athe_R0010  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 92 bp  50.1  0.0001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000232176  n/a   
 
 
-
 
NC_011126  HY04AAS1_R0018  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 83 bp  50.1  0.0001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_R0019    93.75 
 
 		 115 bp  48.1  0.0005  Xylella fastidiosa M23  Bacteria  normal  0.133549  n/a   
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  84.38 
 
 		 98 bp  48.1  0.0005  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_R0019  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 115 bp  48.1  0.0005  Xylella fastidiosa M12  Bacteria  hitchhiker  0.000590922  n/a   
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  46.1  0.002  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 307 bp  46.1  0.002  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 119 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  96.3 
 
 		 100 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_1918  sRNA  96.3 
 
 		 105 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  46.1  0.002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
-
 
NC_008609  Ppro_R0001  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 106 bp  46.1  0.002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00137398  n/a   
 
 
-
 
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  100 
 
 		 115 bp  44.1  0.007  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.007  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_R0006  SRP RNA; RNA component of signal recognitionparti cle  91.18 
 
 		 103 bp  44.1  0.007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 116 bp  44.1  0.007  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  100 
 
 		 116 bp  44.1  0.007  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  100 
 
 		 116 bp  44.1  0.007  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  100 
 
 		 116 bp  44.1  0.007  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.007  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_011661  Dtur_R0033  SRP RNA; RNA component of signal recognitionparti cle  91.18 
 
 		 90 bp  44.1  0.007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  44.1  0.007  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.007  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  100 
 
 		 116 bp  44.1  0.007  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  44.1  0.007  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
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