34 homologs were found in PanDaTox collection
for query gene HY04AAS1_R0018 on replicon NC_011126
Organism: Hydrogenobaculum sp. Y04AAS1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011126  HY04AAS1_R0018  SRP RNA; RNA component of signal recognition particle  100 
 
 
83 bp  165  2.0000000000000002e-39  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_R0010  SRP RNA; RNA component of signal recognition particle  100 
 
 
92 bp  75.8  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000232176  n/a   
 
 
-
 
NC_013522  Taci_R0008  SRP RNA; RNA component of signal recognition particle  100 
 
 
114 bp  71.9  0.00000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0000000137936  n/a   
 
 
-
 
NC_008609  Ppro_R0001  SRP RNA; RNA component of signal recognition particle  100 
 
 
106 bp  65.9  0.000000001  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00137398  n/a   
 
 
-
 
NC_013525  Tter_R0006  SRP RNA; RNA component of signal recognitionparti cle  97.22 
 
 
103 bp  63.9  0.000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_R0033  SRP RNA; RNA component of signal recognitionparti cle  97.14 
 
 
90 bp  61.9  0.00000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_R0021  SRP RNA; RNA component of signal recognition particle  100 
 
 
114 bp  58  0.0000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_R0064  SRP RNA; RNA component of signal recognition particle  96.97 
 
 
89 bp  58  0.0000003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_R0035  SRP RNA; RNA component of signal recognition particle  96.97 
 
 
308 bp  58  0.0000003  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007520  Tcr_R0008  SRP RNA; RNA component of signal recognitionparticle  96.97 
 
 
115 bp  58  0.0000003  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  7.72786e-17  n/a   
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  94.44 
 
 
118 bp  56  0.000001  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  94.44 
 
 
118 bp  56  0.000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_R0006  SRP RNA; RNA component of signal recognition particle  94.44 
 
 
120 bp  56  0.000001  Thermoanaerobacter sp. X514  Bacteria  normal  0.0386858  n/a   
 
 
-
 
NC_008554  Sfum_R0010  SRP RNA; RNA component of signal recognition particle  94.29 
 
 
94 bp  54  0.000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  94.29 
 
 
165 bp  54  0.000005  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  94.29 
 
 
100 bp  54  0.000005  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_013501  Rmar_R0038  SRP RNA; RNA component of signal recognitionparti cle  94.12 
 
 
108 bp  52  0.00002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.263697  n/a   
 
 
-
 
NC_014150  Bmur_R0037  SRP RNA; RNA component of signal recognition particle  96.67 
 
 
87 bp  52  0.00002  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  2.35285e-20  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  93.94 
 
 
109 bp  50.1  0.00008  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  93.94 
 
 
109 bp  50.1  0.00008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_009524  PsycPRwf_R0035  SRP RNA; RNA component of signal recognition particle  93.94 
 
 
114 bp  50.1  0.00008  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.151839 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  93.94 
 
 
118 bp  50.1  0.00008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  93.94 
 
 
110 bp  50.1  0.00008  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_R0019    93.75 
 
 
115 bp  48.1  0.0003  Xylella fastidiosa M23  Bacteria  normal  0.133549  n/a   
 
 
-
 
NC_010730  SYO3AOP1_R0052  SRP RNA; RNA component of signal recognition particle  90 
 
 
98 bp  48.1  0.0003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_R0019  SRP RNA; RNA component of signal recognition particle  93.75 
 
 
115 bp  48.1  0.0003  Xylella fastidiosa M12  Bacteria  hitchhiker  0.000590922  n/a   
 
 
-
 
NC_011146  Gbem_R0005  SRP RNA; RNA component of signal recognition particle  96.43 
 
 
109 bp  48.1  0.0003  Geobacter bemidjiensis Bem  Bacteria  normal  0.803178  n/a   
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  93.75 
 
 
111 bp  48.1  0.0003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  93.75 
 
 
112 bp  48.1  0.0003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
-
 
NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  93.55 
 
 
115 bp  46.1  0.001  Shewanella amazonensis SB2B  Bacteria  normal  hitchhiker  0.00010102 
 
 
-
 
NC_007969  Pcryo_R0034  SRP RNA; RNA component of signal recognition particle  91.43 
 
 
114 bp  46.1  0.001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.157836  normal 
 
 
-
 
NC_007204  Psyc_R0030  SRP RNA; RNA component of signal recognition particle  91.43 
 
 
114 bp  46.1  0.001  Psychrobacter arcticus 273-4  Bacteria  normal  0.313104  hitchhiker  0.000018038 
 
 
-
 
NC_012793  GWCH70_R0007  SRP RNA; RNA component of signal recognitionparti cle  89.47 
 
 
109 bp  44.1  0.005  Geobacillus sp. WCH70  Bacteria  unclonable  0.000000000000685894  n/a   
 
 
-
 
NC_013411  GYMC61_R0006  SRP RNA; RNA component of signal recognition particle  89.47 
 
 
109 bp  44.1  0.005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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