34 homologs were found in PanDaTox collection
for query gene Rmar_R0038 on replicon NC_013501
Organism: Rhodothermus marinus DSM 4252



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013501  Rmar_R0038  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 108 bp  214  2.9999999999999995e-54  Rhodothermus marinus DSM 4252  Bacteria  normal  0.263697  n/a   
 
 
-
 
NC_010513  Xfasm12_R0019  SRP RNA; RNA component of signal recognition particle  100 
 
 		 115 bp  63.9  0.000000008  Xylella fastidiosa M12  Bacteria  hitchhiker  0.000590922  n/a   
 
 
-
 
NC_010577  XfasM23_R0019    100 
 
 		 115 bp  63.9  0.000000008  Xylella fastidiosa M23  Bacteria  normal  0.133549  n/a   
 
 
-
 
NC_009664  Krad_R0006  SRP RNA; RNA component of signal recognition particle  92.86 
 
 		 93 bp  60  0.0000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.558781  normal  0.197707 
 
 
-
 
NC_011071  Smal_R0031  SRP RNA; RNA component of signal recognition particle  100 
 
 		 115 bp  58  0.0000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  94.29 
 
 		 109 bp  54  0.000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  94.29 
 
 		 109 bp  54  0.000007  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_009635  Maeo_R0035  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 308 bp  54  0.000007  Methanococcus aeolicus Nankai-3  Archaea  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  94.29 
 
 		 165 bp  54  0.000007  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  94.29 
 
 		 100 bp  54  0.000007  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_007777  Francci3_R0006  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 92 bp  52  0.00003  Frankia sp. CcI3  Bacteria  normal  0.747626  normal  1 
 
 
-
 
NC_014151  Cfla_R0052  SRP RNA; RNA component of signal recognition particle  96.67 
 
 		 92 bp  52  0.00003  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.100687  decreased coverage  0.00000833927 
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 118 bp  52  0.00003  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_R0010  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 92 bp  52  0.00003  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000232176  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  94.12 
 
 		 118 bp  52  0.00003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011126  HY04AAS1_R0018  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 83 bp  52  0.00003  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 111 bp  52  0.00003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_009524  PsycPRwf_R0035  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 114 bp  52  0.00003  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.151839 
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 112 bp  52  0.00003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  94.12 
 
 		 110 bp  52  0.00003  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 118 bp  52  0.00003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_013522  Taci_R0008  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 114 bp  50.1  0.0001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0000000137936  n/a   
 
 
-
 
NC_008609  Ppro_R0001  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 106 bp  48.1  0.0004  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00137398  n/a   
 
 
-
 
NC_008578  Acel_R0058  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 91 bp  48.1  0.0004  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_R0009  SRP RNA; RNA component of signalrecognitionparti cle  96.3 
 
 		 90 bp  46.1  0.002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013889  TK90_R0044  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 119 bp  46.1  0.002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0198539  normal  0.360014 
 
 
-
 
NC_013530  Xcel_R0010  SRP RNA; RNA component of signal recognitionparti cle  96.3 
 
 		 93 bp  46.1  0.002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_R0021  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 114 bp  46.1  0.002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011661  Dtur_R0033  SRP RNA; RNA component of signal recognitionparti cle  89.74 
 
 		 90 bp  46.1  0.002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_R0055  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 99 bp  44.1  0.007  Frankia sp. EAN1pec  Bacteria  normal  0.603304  normal  1 
 
 
-
 
NC_013521  Sked_04670    93.33 
 
 		 100 bp  44.1  0.007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.310268  normal  0.967006 
 
 
-
 
NC_013159  Svir_36630  bacterial signal recognition particle RNA  91.18 
 
 		 102 bp  44.1  0.007  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00364935  normal  0.318237 
 
 
-
 
NC_013132  Cpin_R0046  SRP RNA; RNA component of signal recognition particle  82.86 
 
 		 100 bp  44.1  0.007  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_R0060  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 91 bp  44.1  0.007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.48161  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>