52 homologs were found in PanDaTox collection
for query gene Psyr_RNA34 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
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NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  94.87 
 
 		 117 bp  184  3e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  90.48 
 
 		 117 bp  129  2.0000000000000002e-28  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  90.48 
 
 		 117 bp  129  2.0000000000000002e-28  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_010501  PputW619_R0058    90.48 
 
 		 117 bp  129  2.0000000000000002e-28  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  87.23 
 
 		 98 bp  91.7  4e-17  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  87.78 
 
 		 117 bp  75.8  0.000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
-
 
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  85.11 
 
 		 118 bp  75.8  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  97.3 
 
 		 101 bp  65.9  0.000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  97.3 
 
 		 104 bp  65.9  0.000000002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  94.59 
 
 		 92 bp  58  0.0000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
-
 
NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 101 bp  56  0.000002  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
-
 
NC_011312  VSAL_I3160s  Bacterial signal recognition particle RNA  86.67 
 
 		 100 bp  56  0.000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_01455  bacterial signal recognition particle RNA  85.07 
 
 		 100 bp  54  0.000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_R0027  SRP RNA; RNA component of signal recognition particle  96.77 
 
 		 118 bp  54  0.000008  Enterobacter sp. 638  Bacteria  normal  0.131699  normal  1 
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  92.31 
 
 		 117 bp  54  0.000008  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_007404  Tbd_R0014  SRP RNA; RNA component of signal recognitionparticle  92.31 
 
 		 99 bp  54  0.000008  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.243503 
 
 
-
 
NC_011658  BCAH187_A0025  Bacterial signal recognition particle RNA  94.12 
 
 		 103 bp  52  0.00003  Bacillus cereus AH187  Bacteria  hitchhiker  0.00110095  n/a   
 
 
-
 
NC_011725  BCB4264_A5622  Bacterial signal recognition particle RNA  94.12 
 
 		 103 bp  52  0.00003  Bacillus cereus B4264  Bacteria  hitchhiker  0.00935785  n/a   
 
 
-
 
NC_010184  BcerKBAB4_R0007  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 105 bp  52  0.00003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.221394  n/a   
 
 
-
 
NC_011772  BCG9842_B5295  Bacterial signal recognition particle RNA  94.12 
 
 		 103 bp  52  0.00003  Bacillus cereus G9842  Bacteria  hitchhiker  0.00057478  normal  1 
 
 
-
 
NC_011773  BCAH820_5599  Bacterial signal recognition particle RNA  94.12 
 
 		 103 bp  52  0.00003  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_009616  Tmel_R0058  SRP RNA; RNA component of signal recognition particle  89.13 
 
 		 105 bp  52  0.00003  Thermosipho melanesiensis BI429  Bacteria  normal  0.175728  n/a   
 
 
-
 
NC_009674  Bcer98_R0007  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 104 bp  52  0.00003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.011849  n/a   
 
 
-
 
NC_011662  Tmz1t_R0010  SRP RNA; RNA component of signal recognitionparti cle  91.89 
 
 		 106 bp  50.1  0.0001  Thauera sp. MZ1T  Bacteria  normal  0.33139  n/a   
 
 
-
 
NC_013421  Pecwa_R0067  SRP RNA; RNA component of signal recognitionparti cle  96.55 
 
 		 117 bp  50.1  0.0001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_010084  Bmul_R0038  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 103 bp  50.1  0.0001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0368326  normal  0.266058 
 
 
-
 
NC_009719  Plav_R0005  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 102 bp  50.1  0.0001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_R0045  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 101 bp  50.1  0.0001  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.265338 
 
 
-
 
NC_013165  Shel_02310  Bacterial signal recognition particle RNA  93.75 
 
 		 97 bp  48.1  0.0005  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.384516  normal  1 
 
 
-
 
NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  48.1  0.0005  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
-
 
NC_008062  Bcen_R0102  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 103 bp  46.1  0.002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105096  n/a   
 
 
-
 
NC_013739  Cwoe_R0042  SRP RNA; RNA component of signal recognitionparti cle  91.43 
 
 		 91 bp  46.1  0.002  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_AR0056  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 103 bp  46.1  0.002  Burkholderia sp. 383  Bacteria  normal  0.0102004  normal  0.775524 
 
 
-
 
NC_013204  Elen_R0015  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 109 bp  46.1  0.002  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  0.712093 
 
 
-
 
NC_013170  Ccur_01560  bacterial signal recognition particle RNA  93.55 
 
 		 97 bp  46.1  0.002  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.916519  hitchhiker  0.00823643 
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 110 bp  46.1  0.002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008390  Bamb_R0048  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 105 bp  46.1  0.002  Burkholderia ambifaria AMMD  Bacteria  normal  0.267779  n/a   
 
 
-
 
NC_008542  Bcen2424_R0046  SRP RNA  91.43 
 
 		 103 bp  46.1  0.002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00820406  n/a   
 
 
-
 
NC_010551  BamMC406_R0048    91.43 
 
 		 103 bp  46.1  0.002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0963367  normal  0.0663879 
 
 
-
 
NC_010508  Bcenmc03_R0048    91.43 
 
 		 103 bp  46.1  0.002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0344887  normal  0.132073 
 
 
-
 
NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 115 bp  46.1  0.002  Shewanella amazonensis SB2B  Bacteria  normal  1  hitchhiker  0.00010102 
 
 
-
 
NC_008639  Cpha266_R0055  SRP RNA; RNA component of signal recognition particle  100 
 
 		 106 bp  44.1  0.008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_R0012    100 
 
 		 103 bp  44.1  0.008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000174989  normal  1 
 
 
-
 
NC_007973  Rmet_R0026  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 104 bp  44.1  0.008  Cupriavidus metallidurans CH34  Bacteria  normal  0.283025  normal  0.297778 
 
 
-
 
NC_007951  Bxe_AR0037  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 103 bp  44.1  0.008  Burkholderia xenovorans LB400  Bacteria  normal  0.0480154  normal  0.14227 
 
 
-
 
NC_010622  Bphy_R0002    91.18 
 
 		 103 bp  44.1  0.008  Burkholderia phymatum STM815  Bacteria  normal  0.180442  normal  0.539085 
 
 
-
 
NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  91.18 
 
 		 104 bp  44.1  0.008  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
-
 
NC_012918  GM21_R0005  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.3194600000000004e-26 
 
 
-
 
NC_008709  Ping_R0084  SRP RNA  93.33 
 
 		 116 bp  44.1  0.008  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000267785  normal  0.896198 
 
 
-
 
NC_009080  BMA10247_3560  signal recognition particle RNA  91.18 
 
 		 102 bp  44.1  0.008  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_R0032  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 104 bp  44.1  0.008  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.000220464  n/a   
 
 
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