45 homologs were found in PanDaTox collection
for query gene Spro_R0041 on replicon NC_009832
Organism: Serratia proteamaculans 568



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
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NC_013421  Pecwa_R0067  SRP RNA; RNA component of signal recognitionparti cle  95.5 
 
 		 117 bp  180  4.999999999999999e-44  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  96 
 
 		 100 bp  167  8e-40  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  96 
 
 		 100 bp  167  8e-40  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  92.79 
 
 		 117 bp  157  7e-37  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  90.99 
 
 		 117 bp  141  3.9999999999999997e-32  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_011312  VSAL_I3160s  Bacterial signal recognition particle RNA  93.26 
 
 		 100 bp  129  2.0000000000000002e-28  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_R0027  SRP RNA; RNA component of signal recognition particle  88.5 
 
 		 118 bp  121  3.9999999999999996e-26  Enterobacter sp. 638  Bacteria  normal  0.131699  normal  1 
 
 
-
 
NC_010468  EcolC_R0082    85.84 
 
 		 118 bp  97.6  6e-19  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
CP001637  EcDH1_R0068  SRP RNA; RNA component of signal recognition particle  85.84 
 
 		 118 bp  97.6  6e-19  Escherichia coli DH1  Bacteria  normal  0.470649  n/a   
 
 
-
 
NC_009783  VIBHAR_01455  bacterial signal recognition particle RNA  87.78 
 
 		 100 bp  91.7  4e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009800  EcHS_A4735  bacterial signal recognition particle RNA  86 
 
 		 100 bp  87.7  6e-16  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A0511  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.235634  normal  1 
 
 
-
 
NC_011149  SeAg_B0508  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00000873189  n/a   
 
 
-
 
NC_011094  SeSA_A0527  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  hitchhiker  0.00404538  normal  1 
 
 
-
 
NC_011083  SeHA_C0570  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.508215  normal  1 
 
 
-
 
NC_011080  SNSL254_A0517  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0211514  normal  1 
 
 
-
 
NC_010658  SbBS512_E4963  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_0545  Bacterial signal recognition particle RNA  85.71 
 
 		 98 bp  83.8  0.000000000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.590935  normal  1 
 
 
-
 
NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  88.71 
 
 		 115 bp  67.9  0.0000000005  Shewanella amazonensis SB2B  Bacteria  normal  1  hitchhiker  0.00010102 
 
 
-
 
NC_009719  Plav_R0005  SRP RNA; RNA component of signal recognition particle  100 
 
 		 102 bp  56  0.000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_R0045  SRP RNA; RNA component of signal recognition particle  100 
 
 		 101 bp  56  0.000002  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.265338 
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  48.1  0.0005  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_009428  Rsph17025_R0006  SRP RNA; RNA component of signal recognition particle  96.43 
 
 		 101 bp  48.1  0.0005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0124002  normal  0.42637 
 
 
-
 
NC_007493  RSP_4343  SRP RNA, 4.5S RNA  96.43 
 
 		 101 bp  48.1  0.0005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_AR0066  SRP RNA, 4.5S RNA  96.43 
 
 		 100 bp  48.1  0.0005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.192792  n/a   
 
 
-
 
NC_009049  Rsph17029_R0039  SRP RNA; RNA component of signal recognition particle  96.43 
 
 		 101 bp  48.1  0.0005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.183217 
 
 
-
 
NC_008686  Pden_R0031  SRP RNA; RNA component of signal recognition particle  96.43 
 
 		 102 bp  48.1  0.0005  Paracoccus denitrificans PD1222  Bacteria  normal  0.0666652  normal  0.0491698 
 
 
-
 
NC_008345  Sfri_R0088  SRP RNA; RNA component of signal recognition particle  83.33 
 
 		 115 bp  48.1  0.0005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  86.57 
 
 		 98 bp  46.1  0.002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 116 bp  44.1  0.008  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_012918  GM21_R0005  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.3194600000000004e-26 
 
 
-
 
NC_011365  Gdia_R0050  SRP RNA; RNA component of signal recognition particle  96.15 
 
 		 109 bp  44.1  0.008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.0253553 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 116 bp  44.1  0.008  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 118 bp  44.1  0.008  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 117 bp  44.1  0.008  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 116 bp  44.1  0.008  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_008639  Cpha266_R0055  SRP RNA; RNA component of signal recognition particle  100 
 
 		 106 bp  44.1  0.008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_R0012    100 
 
 		 103 bp  44.1  0.008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000174989  normal  1 
 
 
-
 
NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  86.96 
 
 		 117 bp  44.1  0.008  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  83.87 
 
 		 116 bp  44.1  0.008  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 116 bp  44.1  0.008  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  86.96 
 
 		 117 bp  44.1  0.008  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  83.87 
 
 		 117 bp  44.1  0.008  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_R0002  SRP RNA; RNA component of signal recognition particle  96.15 
 
 		 101 bp  44.1  0.008  Sphingomonas wittichii RW1  Bacteria  normal  0.0332603  normal  1 
 
 
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