20 homologs were found in PanDaTox collection
for query gene Sfri_R0088 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_R0088  SRP RNA; RNA component of signal recognition particle  100 
 
 		 115 bp  228  2e-58  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
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NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  96.52 
 
 		 116 bp  188  2e-46  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
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NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  96.52 
 
 		 116 bp  188  2e-46  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
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NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  96.52 
 
 		 116 bp  188  2e-46  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
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NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  96.52 
 
 		 117 bp  188  2e-46  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
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NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 118 bp  186  8e-46  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
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NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 117 bp  186  8e-46  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
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NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 116 bp  186  8e-46  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
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NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  95.61 
 
 		 116 bp  178  2e-43  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
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NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  94.69 
 
 		 117 bp  176  8e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
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NC_009901  Spea_R0141  SRP RNA; RNA component of signal recognition particle  94.69 
 
 		 115 bp  176  8e-43  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
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NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  94.78 
 
 		 117 bp  172  1e-41  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
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NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  92.92 
 
 		 115 bp  161  5e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
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NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  91.11 
 
 		 115 bp  115  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  1  hitchhiker  0.00010102 
 
 
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NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  83.72 
 
 		 118 bp  60  0.0000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
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NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  87.04 
 
 		 100 bp  52  0.00003  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
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NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  87.04 
 
 		 100 bp  52  0.00003  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
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NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  87.69 
 
 		 118 bp  50.1  0.0001  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
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NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  83.33 
 
 		 117 bp  48.1  0.0005  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
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NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  83.91 
 
 		 98 bp  46.1  0.002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
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