33 homologs were found in PanDaTox collection
for query gene Shew_R0086 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  97.41 
 
 		 117 bp  206  9e-52  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
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NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  97.39 
 
 		 116 bp  204  4e-51  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  97.39 
 
 		 116 bp  204  4e-51  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
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NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  97.39 
 
 		 116 bp  204  4e-51  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
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NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  98.25 
 
 		 117 bp  202  9.999999999999999e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  97.37 
 
 		 118 bp  202  9.999999999999999e-51  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  97.37 
 
 		 117 bp  202  9.999999999999999e-51  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  97.37 
 
 		 116 bp  202  9.999999999999999e-51  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 116 bp  194  3e-48  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 115 bp  186  8e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_008345  Sfri_R0088  SRP RNA; RNA component of signal recognition particle  94.78 
 
 		 115 bp  172  1e-41  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_R0141  SRP RNA; RNA component of signal recognition particle  92.98 
 
 		 115 bp  155  2.9999999999999998e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  94.05 
 
 		 115 bp  127  7e-28  Shewanella amazonensis SB2B  Bacteria  normal  1  hitchhiker  0.00010102 
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  91.84 
 
 		 100 bp  65.9  0.000000002  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  91.84 
 
 		 100 bp  65.9  0.000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  82.72 
 
 		 119 bp  50.1  0.0001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 118 bp  50.1  0.0001  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  82.72 
 
 		 100 bp  50.1  0.0001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_1918  sRNA  82.72 
 
 		 105 bp  50.1  0.0001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  93.75 
 
 		 118 bp  48.1  0.0005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  93.55 
 
 		 165 bp  46.1  0.002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  93.55 
 
 		 100 bp  46.1  0.002  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 118 bp  46.1  0.002  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  86 
 
 		 117 bp  44.1  0.008  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_013889  TK90_R0044  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  44.1  0.008  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0198539  normal  0.360014 
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  100 
 
 		 112 bp  44.1  0.008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  86.96 
 
 		 117 bp  44.1  0.008  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 111 bp  44.1  0.008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  44.1  0.008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 110 bp  44.1  0.008  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
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