36 homologs were found in PanDaTox collection
for query gene Ssed_R0049 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  100 
 
 		 115 bp  228  2e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 117 bp  194  3e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 116 bp  190  5e-47  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  96.49 
 
 		 117 bp  186  8e-46  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  95.65 
 
 		 118 bp  180  4.999999999999999e-44  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  95.65 
 
 		 117 bp  180  4.999999999999999e-44  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  95.65 
 
 		 116 bp  180  4.999999999999999e-44  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  95.61 
 
 		 116 bp  178  2e-43  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_009901  Spea_R0141  SRP RNA; RNA component of signal recognition particle  94.74 
 
 		 115 bp  178  2e-43  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  95.61 
 
 		 116 bp  178  2e-43  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  95.61 
 
 		 117 bp  178  2e-43  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  95.61 
 
 		 116 bp  178  2e-43  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_R0088  SRP RNA; RNA component of signal recognition particle  92.92 
 
 		 115 bp  161  5e-38  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_R0049  SRP RNA; RNA component of signal recognition particle  94.44 
 
 		 115 bp  139  2e-31  Shewanella amazonensis SB2B  Bacteria  normal  1  hitchhiker  0.00010102 
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  89.8 
 
 		 100 bp  58  0.0000005  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  89.8 
 
 		 100 bp  58  0.0000005  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
-
 
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  86.44 
 
 		 118 bp  54  0.000008  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  88 
 
 		 117 bp  52  0.00003  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  82.56 
 
 		 119 bp  52  0.00003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  82.56 
 
 		 100 bp  52  0.00003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_1918  sRNA  82.56 
 
 		 105 bp  52  0.00003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  93.94 
 
 		 118 bp  50.1  0.0001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  93.55 
 
 		 100 bp  46.1  0.002  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 117 bp  46.1  0.002  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_010501  PputW619_R0058    86.27 
 
 		 117 bp  46.1  0.002  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  93.55 
 
 		 165 bp  46.1  0.002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  86.27 
 
 		 98 bp  46.1  0.002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  86.27 
 
 		 117 bp  46.1  0.002  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 118 bp  46.1  0.002  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_R0053  SRP RNA; RNA component of signal recognition particle  100 
 
 		 112 bp  44.1  0.008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148167  n/a   
 
 
-
 
NC_013889  TK90_R0044  SRP RNA; RNA component of signal recognition particle  100 
 
 		 119 bp  44.1  0.008  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0198539  normal  0.360014 
 
 
-
 
NC_011891  A2cp1_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0792921  n/a   
 
 
-
 
NC_011145  AnaeK_R0054  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 109 bp  44.1  0.008  Anaeromyxobacter sp. K  Bacteria  normal  0.431855  n/a   
 
 
-
 
NC_009675  Anae109_R0052  SRP RNA; RNA component of signal recognition particle  100 
 
 		 111 bp  44.1  0.008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.270066  normal  0.727224 
 
 
-
 
NC_007963  Csal_R0046  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  44.1  0.008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 110 bp  44.1  0.008  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>