44 homologs were found in PanDaTox collection
for query gene Jann_R0045 on replicon NC_007802
Organism: Jannaschia sp. CCS1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007802  Jann_R0045  SRP RNA; RNA component of signal recognition particle  100 
 
 		 101 bp  200  5e-50  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.265338 
 
 
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NC_008686  Pden_R0031  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 102 bp  137  6.0000000000000005e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.0666652  normal  0.0491698 
 
 
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NC_007493  RSP_4343  SRP RNA, 4.5S RNA  90.32 
 
 		 101 bp  113  8.000000000000001e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
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NC_009428  Rsph17025_R0006  SRP RNA; RNA component of signal recognition particle  90.32 
 
 		 101 bp  113  8.000000000000001e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0124002  normal  0.42637 
 
 
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NC_009049  Rsph17029_R0039  SRP RNA; RNA component of signal recognition particle  90.32 
 
 		 101 bp  113  8.000000000000001e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.183217 
 
 
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NC_009719  Plav_R0005  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 102 bp  91.7  3e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_AR0066  SRP RNA, 4.5S RNA  97.56 
 
 		 100 bp  73.8  0.000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.192792  n/a   
 
 
-
 
NC_009511  Swit_R0002  SRP RNA; RNA component of signal recognition particle  95.35 
 
 		 101 bp  69.9  0.0000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.0332603  normal  1 
 
 
-
 
NC_011365  Gdia_R0050  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 109 bp  58  0.0000004  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.0253553 
 
 
-
 
NC_011004  Rpal_R0060  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 105 bp  58  0.0000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_R0045  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 102 bp  58  0.0000004  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_R0038    92.68 
 
 		 101 bp  58  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010581  Bind_R0002    92.68 
 
 		 102 bp  58  0.0000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.251285  normal  1 
 
 
-
 
NC_011369  Rleg2_R0063  SRP RNA; RNA component of signal recognitionparticle  92.68 
 
 		 103 bp  58  0.0000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_R0001  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 106 bp  58  0.0000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0311413  n/a   
 
 
-
 
NC_009636  Smed_R0061  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 104 bp  58  0.0000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_R0045    92.68 
 
 		 101 bp  58  0.0000004  Methylobacterium populi BJ001  Bacteria  normal  0.726744  normal  1 
 
 
-
 
NC_009485  BBta_miscRNA1  SRP  92.68 
 
 		 98 bp  58  0.0000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_R0005  SRP RNA; RNA component of signal recognitionparti cle  92.68 
 
 		 102 bp  58  0.0000004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0469239 
 
 
-
 
NC_011757  Mchl_R0048  SRP RNA; RNA component of signal recognitionparti cle  92.68 
 
 		 102 bp  58  0.0000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_R0051  SRP RNA; RNA component of signal recognitionparti cle  92.68 
 
 		 102 bp  58  0.0000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.047021  n/a   
 
 
-
 
NC_011989  Avi_4516  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 98 bp  58  0.0000004  Agrobacterium vitis S4  Bacteria  normal  0.681082  n/a   
 
 
-
 
NC_007958  RPD_R0002  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 103 bp  58  0.0000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.455349  normal  0.0619006 
 
 
-
 
NC_012850  Rleg_R0061  SRP RNA; RNA component of signal recognitionparti cle  92.68 
 
 		 103 bp  58  0.0000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_R0071  SRP RNA; RNA component of signal recognition particle  92.68 
 
 		 105 bp  58  0.0000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.163285  normal  1 
 
 
-
 
NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  56  0.000002  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
-
 
NC_011312  VSAL_I3160s  Bacterial signal recognition particle RNA  100 
 
 		 100 bp  52  0.00003  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  96.67 
 
 		 117 bp  52  0.00003  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_013421  Pecwa_R0067  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 117 bp  52  0.00003  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_R0023  SRP RNA; RNA component of signal recognition particle  94.12 
 
 		 102 bp  52  0.00003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.262028  normal  0.481492 
 
 
-
 
NC_009484  Acry_R0038  SRP RNA; RNA component of signal recognition particle  90.24 
 
 		 106 bp  50.1  0.0001  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_R0007  SRP RNA; RNA component of signal recognition particle  90.24 
 
 		 105 bp  50.1  0.0001  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 92 bp  50.1  0.0001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
-
 
NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  96.55 
 
 		 117 bp  50.1  0.0001  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 117 bp  50.1  0.0001  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_009436  Ent638_R0027  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  48.1  0.0004  Enterobacter sp. 638  Bacteria  normal  0.131699  normal  1 
 
 
-
 
NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 101 bp  48.1  0.0004  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
-
 
NC_012918  GM21_R0005  SRP RNA; RNA component of signal recognitionparti cle  96.43 
 
 		 109 bp  48.1  0.0004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.3194600000000004e-26 
 
 
-
 
NC_010718  Nther_R0012    96.3 
 
 		 103 bp  46.1  0.002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000174989  normal  1 
 
 
-
 
NC_011769  DvMF_R0074  SRP RNA; RNA component of signal recognitionparti cle  89.74 
 
 		 89 bp  46.1  0.002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  96.15 
 
 		 100 bp  44.1  0.006  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_009783  VIBHAR_01455  bacterial signal recognition particle RNA  96.15 
 
 		 100 bp  44.1  0.006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  96.15 
 
 		 100 bp  44.1  0.006  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
-
 
NC_008639  Cpha266_R0055  SRP RNA; RNA component of signal recognition particle  100 
 
 		 106 bp  44.1  0.006  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
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