29 homologs were found in PanDaTox collection
for query gene GM21_R0005 on replicon NC_012918
Organism: Geobacter sp. M21



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_R0005  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 
109 bp  216  9e-55  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.3194600000000004e-26 
 
 
-
 
NC_011146  Gbem_R0005  SRP RNA; RNA component of signal recognition particle  99.08 
 
 
109 bp  208  2e-52  Geobacter bemidjiensis Bem  Bacteria  normal  0.803178  n/a   
 
 
-
 
NC_009483  Gura_R0057  SRP RNA; RNA component of signal recognition particle  90.38 
 
 
124 bp  127  6e-28  Geobacter uraniireducens Rf4  Bacteria  normal  0.0673338  n/a   
 
 
-
 
NC_008609  Ppro_R0001  SRP RNA; RNA component of signal recognition particle  84.93 
 
 
106 bp  58  0.0000005  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00137398  n/a   
 
 
-
 
NC_010718  Nther_R0012    96.97 
 
 
103 bp  58  0.0000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000174989  normal 
 
 
-
 
NC_010320  Teth514_R0006  SRP RNA; RNA component of signal recognition particle  88.68 
 
 
120 bp  58  0.0000005  Thermoanaerobacter sp. X514  Bacteria  normal  0.0386858  n/a   
 
 
-
 
NC_009012  Cthe_R0033  SRP RNA; RNA component of signal recognition particle  87.5 
 
 
106 bp  56  0.000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.60834  n/a   
 
 
-
 
NC_008554  Sfum_R0010  SRP RNA; RNA component of signal recognition particle  96.77 
 
 
94 bp  54  0.000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_R0008  4.5S RNA, SRP RNA  93.94 
 
 
103 bp  50.1  0.0001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.145743  hitchhiker  0.00000711597 
 
 
-
 
NC_009719  Plav_R0005  SRP RNA; RNA component of signal recognition particle  96.43 
 
 
102 bp  48.1  0.0005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_R0045  SRP RNA; RNA component of signal recognition particle  96.43 
 
 
101 bp  48.1  0.0005  Jannaschia sp. CCS1  Bacteria  normal  normal  0.265338 
 
 
-
 
NC_013421  Pecwa_R0067  SRP RNA; RNA component of signal recognitionparti cle  96.3 
 
 
117 bp  46.1  0.002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  91.43 
 
 
117 bp  46.1  0.002  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_011899  Hore_R0085    93.55 
 
 
103 bp  46.1  0.002  Halothermothrix orenii H 168  Bacteria  unclonable  1.917e-19  n/a   
 
 
-
 
NC_011761  AFE_1918  sRNA  91.43 
 
 
105 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  91.43 
 
 
100 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I3160s  Bacterial signal recognition particle RNA  96.3 
 
 
100 bp  46.1  0.002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  91.43 
 
 
119 bp  46.1  0.002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_008789  Hhal_R0005  SRP RNA  91.43 
 
 
118 bp  46.1  0.002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_R0050  SRP RNA; RNA component of signal recognition particle  91.18 
 
 
109 bp  44.1  0.007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0253553 
 
 
-
 
NC_008639  Cpha266_R0055  SRP RNA; RNA component of signal recognition particle  100 
 
 
106 bp  44.1  0.007  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_R0074  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 
89 bp  44.1  0.007  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_R0001  SRP RNA; RNA component of signal recognition particle  93.33 
 
 
123 bp  44.1  0.007  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.267519  n/a   
 
 
-
 
NC_012793  GWCH70_R0007  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 
109 bp  44.1  0.007  Geobacillus sp. WCH70  Bacteria  unclonable  0.000000000000685894  n/a   
 
 
-
 
NC_009832  Spro_R0041  SRP RNA; RNA component of signal recognition particle  100 
 
 
117 bp  44.1  0.007  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0000286678  hitchhiker  0.00000116096 
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  100 
 
 
117 bp  44.1  0.007  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal 
 
 
-
 
NC_013173  Dbac_R0016  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 
89 bp  44.1  0.007  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00053216  n/a   
 
 
-
 
NC_013411  GYMC61_R0006  SRP RNA; RNA component of signal recognition particle  93.33 
 
 
109 bp  44.1  0.007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_R0027  SRP RNA; RNA component of signal recognition particle  100 
 
 
118 bp  44.1  0.007  Enterobacter sp. 638  Bacteria  normal  0.131699  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>