26 homologs were found in PanDaTox collection
for query gene Dgeo_R0056 on replicon NC_008025
Organism: Deinococcus geothermalis DSM 11300



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008025  Dgeo_R0056  SRP RNA; RNA component of signal recognition particle  100 
 
 		 106 bp  210  5e-53  Deinococcus geothermalis DSM 11300  Bacteria  hitchhiker  0.0000625085  normal  0.583061 
 
 
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NC_011662  Tmz1t_R0010  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 106 bp  63.9  0.000000007  Thauera sp. MZ1T  Bacteria  normal  0.33139  n/a   
 
 
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NC_007577  PMT9312_R0034  SRP RNA  91.49 
 
 		 102 bp  61.9  0.00000003  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
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NC_009091  P9301_ffsVIMSS1309401  ffs 4.5S RNA component of the signal recognition particle (SRP)  91.49 
 
 		 81 bp  61.9  0.00000003  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  1  n/a   
 
 
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NC_008816  A9601_ffsVIMSS1309389  4.5S RNA component of the signal recognition particle (SRP)  91.49 
 
 		 81 bp  61.9  0.00000003  Prochlorococcus marinus str. AS9601  Bacteria  normal  1  n/a   
 
 
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NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 117 bp  56  0.000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
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NC_014212  Mesil_R0019  SRP RNA; RNA component of signal recognition particle  94.44 
 
 		 107 bp  56  0.000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0274413 
 
 
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NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  94.44 
 
 		 105 bp  56  0.000002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
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NC_008709  Ping_R0084  SRP RNA  96.88 
 
 		 116 bp  56  0.000002  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000267785  normal  0.896198 
 
 
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NC_008819  NATL1_ffsVIMSS1309407  4.5S RNA component of the signal recognition particle (SRP)  92.31 
 
 		 97 bp  54  0.000007  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.42344  normal  1 
 
 
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NC_013204  Elen_R0015  SRP RNA; RNA component of signal recognition particle  92.11 
 
 		 109 bp  52  0.00003  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  0.712093 
 
 
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NC_013170  Ccur_01560  bacterial signal recognition particle RNA  92.11 
 
 		 97 bp  52  0.00003  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.916519  hitchhiker  0.00823643 
 
 
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NC_013165  Shel_02310  Bacterial signal recognition particle RNA  92.11 
 
 		 97 bp  52  0.00003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.384516  normal  1 
 
 
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NC_009484  Acry_R0038  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 106 bp  50.1  0.0001  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
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NC_013203  Apar_R0047  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 94 bp  50.1  0.0001  Atopobium parvulum DSM 20469  Bacteria  normal  1  normal  0.168836 
 
 
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NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  93.75 
 
 		 101 bp  48.1  0.0004  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_009486  Tpet_R0052  SRP RNA; RNA component of signal recognition particle  91.67 
 
 		 107 bp  48.1  0.0004  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 117 bp  48.1  0.0004  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
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NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 117 bp  48.1  0.0004  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
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NC_010501  PputW619_R0058    93.75 
 
 		 117 bp  48.1  0.0004  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
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NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  93.75 
 
 		 104 bp  48.1  0.0004  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
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NC_008817  P9515_ffsVIMSS1309395  4.5S RNA component of the signal recognition particle (SRP)  89.74 
 
 		 81 bp  46.1  0.002  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  1  n/a   
 
 
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NC_013124  Afer_R0007  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 110 bp  46.1  0.002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.24199  n/a   
 
 
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NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 92 bp  44.1  0.007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
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NC_010338  Caul_R0010  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.007  Caulobacter sp. K31  Bacteria  normal  0.767772  normal  1 
 
 
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NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.007  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
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