19 homologs were found in PanDaTox collection
for query gene Syncc9605_R0028 on replicon NC_007516
Organism: Synechococcus sp. CC9605



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007516  Syncc9605_R0028  SRP RNA; RNA component of signal recognition particle  100 
 
 		 101 bp  200  5e-50  Synechococcus sp. CC9605  Bacteria  normal  1  normal  0.0658959 
 
 
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NC_007335  PMN2A_R0016  SRP RNA; RNA component of signal recognitionparticle  89.36 
 
 		 101 bp  107  5e-22  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.422508  n/a   
 
 
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NC_008820  P9303_ffsVIMSS1309425  4.5S RNA component of the signal recognition particle (SRP)  89.36 
 
 		 97 bp  107  5e-22  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.172921 
 
 
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NC_008819  NATL1_ffsVIMSS1309407  4.5S RNA component of the signal recognition particle (SRP)  88.3 
 
 		 97 bp  99.6  1e-19  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.42344  normal  1 
 
 
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NC_009976  P9211_ffsVIMSS1309441  ffs 4.5S RNA component of the signal recognition particle (SRP)  84.88 
 
 		 101 bp  67.9  0.0000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  1 
 
 
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NC_007577  PMT9312_R0034  SRP RNA  91.67 
 
 		 102 bp  63.9  0.000000007  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
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NC_008816  A9601_ffsVIMSS1309389  4.5S RNA component of the signal recognition particle (SRP)  91.67 
 
 		 81 bp  63.9  0.000000007  Prochlorococcus marinus str. AS9601  Bacteria  normal  1  n/a   
 
 
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NC_009091  P9301_ffsVIMSS1309401  ffs 4.5S RNA component of the signal recognition particle (SRP)  91.67 
 
 		 81 bp  63.9  0.000000007  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  1  n/a   
 
 
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NC_013161  Cyan8802_R0016  SRP RNA; RNA component of signal recognition particle  89.58 
 
 		 98 bp  56  0.000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.629048  normal  0.151745 
 
 
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NC_011729  PCC7424_R0031  SRP RNA; RNA component of signal recognitionparti cle  89.58 
 
 		 98 bp  56  0.000002  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.000907546 
 
 
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NC_011726  PCC8801_R0017  SRP RNA; RNA component of signal recognitionparticle  89.58 
 
 		 98 bp  56  0.000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
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NC_008312  Tery_R0010  SRP RNA; RNA component of signal recognition particle  94.29 
 
 		 102 bp  54  0.000007  Trichodesmium erythraeum IMS101  Bacteria  normal  0.204988  normal  1 
 
 
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NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 117 bp  48.1  0.0004  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
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NC_007604  Synpcc7942_R0047  SRP RNA  87.5 
 
 		 101 bp  48.1  0.0004  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  0.144532 
 
 
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NC_007413  Ava_R0054  SRP RNA; RNA component of signal recognitionparticle  87.5 
 
 		 102 bp  48.1  0.0004  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
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NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 117 bp  46.1  0.002  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
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NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 117 bp  46.1  0.002  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
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NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  96.3 
 
 		 105 bp  46.1  0.002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
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NC_010501  PputW619_R0058    96.3 
 
 		 117 bp  46.1  0.002  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
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