50 homologs were found in PanDaTox collection
for query gene Pmen_R0047 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  100 
 
 		 118 bp  234  4.0000000000000004e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  91.75 
 
 		 98 bp  129  2.0000000000000002e-28  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  90.43 
 
 		 117 bp  115  3e-24  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_010501  PputW619_R0058    90.43 
 
 		 117 bp  115  3e-24  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  90.43 
 
 		 117 bp  115  3e-24  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_008740  Maqu_R0035  SRP RNA; RNA component of signal recognition particle  97.67 
 
 		 117 bp  77.8  0.0000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.0122517  n/a   
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  85.11 
 
 		 117 bp  75.8  0.000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_008340  Mlg_R0042  SRP RNA; RNA component of signal recognition particle  84.95 
 
 		 118 bp  73.8  0.000000000009  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.332893  normal  0.55167 
 
 
-
 
NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  84.21 
 
 		 117 bp  69.9  0.0000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
-
 
NC_008789  Hhal_R0005  SRP RNA  88.41 
 
 		 118 bp  65.9  0.000000002  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  94.87 
 
 		 117 bp  61.9  0.00000003  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_011761  AFE_1917  Bacterial signal recognition particle RNA  94.59 
 
 		 100 bp  58  0.0000005  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011206  Lferr_R0056  SRP RNA; RNA component of signal recognition particle  94.59 
 
 		 119 bp  58  0.0000005  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.654574  normal  0.0337609 
 
 
-
 
NC_011761  AFE_1918  sRNA  94.59 
 
 		 105 bp  58  0.0000005  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_010483  TRQ2_R0052  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 105 bp  56  0.000002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_01455  bacterial signal recognition particle RNA  88.24 
 
 		 100 bp  56  0.000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_R0049  SRP RNA; RNA component of signal recognition particle  86.44 
 
 		 115 bp  54  0.000008  Shewanella sediminis HAW-EB3  Bacteria  normal  0.769611  hitchhiker  0.0000648545 
 
 
-
 
NC_009634  Mevan_R0013  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus vannielii SB  Archaea  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A4232  bacterial signal recognition particle RNA  91.89 
 
 		 100 bp  50.1  0.0001  Yersinia pestis Angola  Bacteria  normal  0.0230281  normal  0.0689063 
 
 
-
 
NC_012912  Dd1591_R0068  SRP RNA; RNA component of signal recognitionparti cle  93.94 
 
 		 117 bp  50.1  0.0001  Dickeya zeae Ech1591  Bacteria  normal  0.0668362  n/a   
 
 
-
 
NC_009997  Sbal195_R0051  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 116 bp  50.1  0.0001  Shewanella baltica OS195  Bacteria  normal  0.936819  normal  0.390912 
 
 
-
 
NC_007954  Sden_R0083  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 116 bp  50.1  0.0001  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_4322  bacterial signal recognition particle RNA  91.89 
 
 		 100 bp  50.1  0.0001  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000116884  n/a   
 
 
-
 
NC_009665  Shew185_R0041  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 116 bp  50.1  0.0001  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_R0100  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 117 bp  50.1  0.0001  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.0000173564 
 
 
-
 
NC_009637  MmarC7_R0010  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus maripaludis C7  Archaea  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_R0111  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 116 bp  50.1  0.0001  Shewanella sp. ANA-3  Bacteria  normal  1  normal  0.360331 
 
 
-
 
NC_008321  Shewmr4_R0114  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 118 bp  50.1  0.0001  Shewanella sp. MR-4  Bacteria  normal  1  hitchhiker  0.00130833 
 
 
-
 
NC_008322  Shewmr7_R0114  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 117 bp  50.1  0.0001  Shewanella sp. MR-7  Bacteria  normal  0.467356  normal  0.0211031 
 
 
-
 
NC_011365  Gdia_R0050  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 109 bp  50.1  0.0001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.0253553 
 
 
-
 
NC_008345  Sfri_R0088  SRP RNA; RNA component of signal recognition particle  87.69 
 
 		 115 bp  50.1  0.0001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_R0029  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 117 bp  50.1  0.0001  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_R0004  SRP RNA; RNA component of signal recognition particle  96.55 
 
 		 307 bp  50.1  0.0001  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_009092  Shew_R0086  SRP RNA; RNA component of signal recognition particle  91.89 
 
 		 117 bp  50.1  0.0001  Shewanella loihica PV-4  Bacteria  normal  0.652506  normal  0.0124909 
 
 
-
 
NC_009052  Sbal_R0030  SRP RNA; RNA component of signal recognitionparticle  91.89 
 
 		 116 bp  50.1  0.0001  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I3160s  Bacterial signal recognition particle RNA  86.76 
 
 		 100 bp  48.1  0.0005  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 118 bp  48.1  0.0005  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2225  bacterial signal recognition particle RNA  93.75 
 
 		 100 bp  48.1  0.0005  Coxiella burnetii RSA 331  Bacteria  normal  0.101315  n/a   
 
 
-
 
NC_009727  CBUD_0669a  hypothetical protein  93.75 
 
 		 165 bp  48.1  0.0005  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  83.82 
 
 		 117 bp  48.1  0.0005  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
-
 
NC_009511  Swit_R0002  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 101 bp  48.1  0.0005  Sphingomonas wittichii RW1  Bacteria  normal  0.0332603  normal  1 
 
 
-
 
NC_009486  Tpet_R0052  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 107 bp  48.1  0.0005  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009484  Acry_R0038  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 106 bp  48.1  0.0005  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_R0048  SRP RNA; RNA component of signal recognition  93.55 
 
 		 118 bp  46.1  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0970685  n/a   
 
 
-
 
NC_009975  MmarC6_R0040  SRP RNA; RNA component of signal recognition particle  100 
 
 		 307 bp  44.1  0.008  Methanococcus maripaludis C6  Archaea  normal  0.0420787  n/a   
 
 
-
 
NC_009428  Rsph17025_R0006  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0124002  normal  0.42637 
 
 
-
 
NC_009049  Rsph17029_R0039  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.183217 
 
 
-
 
NC_008686  Pden_R0031  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 102 bp  44.1  0.008  Paracoccus denitrificans PD1222  Bacteria  normal  0.0666652  normal  0.0491698 
 
 
-
 
NC_007643  Rru_AR0066  SRP RNA, 4.5S RNA  93.33 
 
 		 100 bp  44.1  0.008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.192792  n/a   
 
 
-
 
NC_007493  RSP_4343  SRP RNA, 4.5S RNA  93.33 
 
 		 101 bp  44.1  0.008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
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