16 homologs were found in PanDaTox collection
for query gene BBta_4252 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_4252  hypothetical protein  100 
 
 
76 aa  153  7e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.79426  normal  0.685229 
 
 
-
 
NC_007958  RPD_4413  hypothetical protein  73.97 
 
 
75 aa  115  1.9999999999999998e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.945619  normal 
 
 
-
 
NC_011004  Rpal_5314  regulatory protein, FmdB family  61.64 
 
 
75 aa  101  4e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0420  hypothetical protein  62.16 
 
 
75 aa  100  5e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.865694  normal 
 
 
-
 
NC_007778  RPB_4703  hypothetical protein  64.38 
 
 
75 aa  92  2e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4303  FmdB family regulatory protein  56 
 
 
75 aa  84  6e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.224092  normal 
 
 
-
 
NC_002977  MCA0261  hypothetical protein  50.68 
 
 
77 aa  81.6  0.000000000000003  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3238  hypothetical protein  48.68 
 
 
80 aa  78.6  0.00000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.882851  n/a   
 
 
-
 
NC_007952  Bxe_B1459  hypothetical protein  49.33 
 
 
78 aa  77.8  0.00000000000005  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00501931 
 
 
-
 
NC_011206  Lferr_1219  regulatory protein, FmdB family  56.58 
 
 
76 aa  73.2  0.000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.00000000778963 
 
 
-
 
NC_011761  AFE_1501  hypothetical protein  56.58 
 
 
76 aa  73.2  0.000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2706  FmdB family regulatory protein  40.28 
 
 
79 aa  65.5  0.0000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.589032 
 
 
-
 
NC_010524  Lcho_1427  FmdB family regulatory protein  37.33 
 
 
80 aa  55.8  0.0000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010627  Bphy_7750  FmdB family regulatory protein  46.67 
 
 
80 aa  53.1  0.000001  Burkholderia phymatum STM815  Bacteria  normal  0.572116  normal 
 
 
-
 
NC_008781  Pnap_2352  FmdB family regulatory protein  33.33 
 
 
83 aa  51.2  0.000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2310  regulatory protein, FmdB family  38.89 
 
 
78 aa  47.4  0.00007  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0545212 
 
 
-
 
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