45 homologs were found in PanDaTox collection
for query gene Rpic12D_1184 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012856  Rpic12D_1184  HAD-superfamily hydrolase, subfamily IIB  100 
 
 
297 aa  595  1e-169  Ralstonia pickettii 12D  Bacteria  normal  0.24726  normal 
 
 
-
 
NC_010682  Rpic_1091  HAD-superfamily hydrolase, subfamily IIB  97.64 
 
 
297 aa  582  1e-165  Ralstonia pickettii 12J  Bacteria  normal  0.024164  normal 
 
 
-
 
NC_003295  RSc1263  hypothetical protein  83.73 
 
 
295 aa  504  1e-142  Ralstonia solanacearum GMI1000  Bacteria  normal  0.151023  normal  0.478475 
 
 
-
 
NC_007973  Rmet_2056  HAD family hydrolase  62.55 
 
 
268 aa  328  9e-89  Cupriavidus metallidurans CH34  Bacteria  normal  0.413042  normal 
 
 
-
 
NC_007347  Reut_A2053  HAD family hydrolase  63.6 
 
 
287 aa  327  1e-88  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3500  HAD family hydrolase  49.41 
 
 
267 aa  253  4e-66  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.126173 
 
 
-
 
NC_009636  Smed_2700  HAD family hydrolase  47.53 
 
 
270 aa  237  2e-61  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5932  HAD family hydrolase  47.37 
 
 
265 aa  235  8e-61  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4690  HAD-superfamily hydrolase, subfamily IIB  43.78 
 
 
275 aa  213  4e-54  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4133  HAD family hydrolase  45.1 
 
 
271 aa  212  5e-54  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0616  HAD family hydrolase  46.18 
 
 
278 aa  209  4e-53  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0595  HAD-superfamily hydrolase, subfamily IIB  45.42 
 
 
278 aa  206  5e-52  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0644  HAD family hydrolase  42.8 
 
 
283 aa  198  7e-50  Rhodoferax ferrireducens T118  Bacteria  normal  0.123589  n/a   
 
 
-
 
NC_008752  Aave_4067  HAD family hydrolase  44.56 
 
 
301 aa  193  3e-48  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2219  HAD family hydrolase  37.65 
 
 
259 aa  177  1e-43  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2097  HAD family hydrolase  36.61 
 
 
268 aa  176  5e-43  Psychromonas ingrahamii 37  Bacteria  normal  0.978592  normal  0.811139 
 
 
-
 
NC_008347  Mmar10_0769  HAD family hydrolase  37.84 
 
 
257 aa  173  3e-42  Maricaulis maris MCS10  Bacteria  normal  0.0183682  normal  0.618821 
 
 
-
 
NC_009784  VIBHAR_06400  hypothetical protein  37.17 
 
 
274 aa  173  3e-42  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012848  Rleg_5210  HAD-superfamily hydrolase, subfamily IIB  40 
 
 
281 aa  170  3e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.43756 
 
 
-
 
NC_010512  Bcenmc03_6760  HAD family hydrolase  37.27 
 
 
263 aa  165  8e-40  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1558  HAD family hydrolase  37.97 
 
 
263 aa  162  6e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6271  HAD family hydrolase  37.97 
 
 
263 aa  162  6e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  0.274563  normal  0.690052 
 
 
-
 
NC_009654  Mmwyl1_0610  HAD family hydrolase  37.12 
 
 
282 aa  162  7e-39  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  1.52168e-06 
 
 
-
 
NC_013440  Hoch_5196  HAD-superfamily hydrolase, subfamily IIB  37.35 
 
 
278 aa  139  5e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3874  HAD family hydrolase  29.92 
 
 
260 aa  115  9e-25  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0597322 
 
 
-
 
NC_007413  Ava_3590  HAD family hydrolase  32.27 
 
 
270 aa  110  3e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.684772  normal  0.0477257 
 
 
-
 
NC_011729  PCC7424_0088  HAD-superfamily hydrolase, subfamily IIB  29.41 
 
 
265 aa  102  8e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0509044 
 
 
-
 
NC_007604  Synpcc7942_0566  HAD family hydrolase  30.3 
 
 
251 aa  94.7  2e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0688357 
 
 
-
 
NC_011884  Cyan7425_5151  HAD-superfamily hydrolase, subfamily IIB  31.73 
 
 
321 aa  88.6  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0700  putative HAD superfamily hydrolase  36.84 
 
 
273 aa  51.6  1e-05  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1519  HAD family hydrolase  21.28 
 
 
277 aa  48.9  9e-05  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1274  Cof-like hydrolase  25.95 
 
 
272 aa  47  0.0004  Acidiphilium cryptum JF-5  Bacteria  normal  0.442966  n/a   
 
 
-
 
NC_013595  Sros_8838  hypothetical protein  35.71 
 
 
572 aa  46.6  0.0005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.139707 
 
 
-
 
NC_009664  Krad_0255  HAD-superfamily hydrolase, subfamily IIB  33.93 
 
 
290 aa  46.6  0.0006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.962827  hitchhiker  0.00110837 
 
 
-
 
NC_008262  CPR_1309  HAD family hydrolase  20.92 
 
 
277 aa  46.2  0.0006  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2337  phosphoglycolate phosphatase  26.67 
 
 
226 aa  46.2  0.0007  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.488898  normal  0.0135027 
 
 
-
 
NC_012803  Mlut_00960  Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily/HAD-superfamily hydrolase, subfamily IIB  37.04 
 
 
282 aa  46.2  0.0007  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1870  class II-B haloacid dehalogenase  26.25 
 
 
265 aa  45.8  0.0008  Psychrobacter arcticus 273-4  Bacteria  normal  0.791968  normal  0.480034 
 
 
-
 
NC_013515  Smon_1446  Cof-like hydrolase  20.88 
 
 
265 aa  44.7  0.002  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_2159  Cof protein  38.57 
 
 
268 aa  44.7  0.002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1759  HAD-superfamily cof-like hydrolase  35.53 
 
 
289 aa  43.1  0.005  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1830  Cof-like hydrolase  33.33 
 
 
260 aa  43.1  0.006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009051  Memar_1919  SPP-like hydrolase  26.19 
 
 
234 aa  43.1  0.006  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2176  HAD-superfamily hydrolase, subfamily IIB  39.06 
 
 
258 aa  42.7  0.007  Bacillus cereus AH187  Bacteria  normal  0.685473  n/a   
 
 
-
 
NC_006055  Mfl481  HAD-superfamily cof-like hydrolase  21.4 
 
 
282 aa  42.4  0.009  Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
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