33 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
TK90_0323  CDS  NC_013889  343878  345143  1266  Three-deoxy-D-manno-octulosonic-acid transferase domain protein  YP_003459574  decreased coverage  0.00355635  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0444  CDS  NC_013889  462696  462902  207  Hemin uptake protein hemP  YP_003459695  decreased coverage  1.83054e-05  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0445  CDS  NC_013889  463046  465250  2205  TonB-dependent receptor  YP_003459696  decreased coverage  0.000342866  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0537  CDS  NC_013889  568540  570075  1536  integral membrane sensor signal transduction histidine kinase  YP_003459788  decreased coverage  0.00545163  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0539  CDS  NC_013889  571812  572273  462  hypothetical protein  YP_003459790  decreased coverage  0.00419696  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0540  CDS  NC_013889  572372  572899  528  hypothetical protein  YP_003459791  decreased coverage  0.00507326  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0665  CDS  NC_013889  705517  706944  1428  nitrate-binding protein NrtA precursor, periplasmic  YP_003459916  normal  0.0120522  decreased coverage  0.00176089  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0666  CDS  NC_013889  706993  707928  936  nitrate ABC transporter, inner membrane subunit  YP_003459917  normal  0.0569164  decreased coverage  0.0039857  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0751  CDS  NC_013889  808610  810115  1506  NADH/Ubiquinone/plastoquinone (complex I)  YP_003460002  decreased coverage  0.00659406  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0778  CDS  NC_013889  832367  833035  669  hypothetical protein  YP_003460029  decreased coverage  0.00706916  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_0849  CDS  NC_013889  905278  908223  2946  multi-sensor signal transduction histidine kinase  YP_003460100  decreased coverage  0.000864337  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1211  CDS  NC_013889  1291300  1292007  708  cytidylate kinase  YP_003460456  decreased coverage  0.00218748  normal  0.15361  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1325  CDS  NC_013889  1412018  1414060  2043  transglutaminase domain protein  YP_003460569  decreased coverage  0.00529222  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1527  CDS  NC_013889  1625721  1627190  1470  4-alpha-glucanotransferase  YP_003460767  normal  0.969905  decreased coverage  2.10459e-05  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1542  CDS  NC_013889  1641346  1642329  984  transposase IS116/IS110/IS902 family protein  YP_003460779  decreased coverage  0.00714409  hitchhiker  0.00689732  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1651  CDS  NC_013889  1771434  1771781  348  Antibiotic biosynthesis monooxygenase  YP_003460882  decreased coverage  0.00430685  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1652  CDS  NC_013889  1771806  1773266  1461  blue (type 1) copper domain protein  YP_003460883  decreased coverage  0.00373533  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1733  CDS  NC_013889  1854658  1857852  3195  acriflavin resistance protein  YP_003460960  decreased coverage  0.00373856  normal  0.683525  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1815  CDS  NC_013889  1931268  1931654  387  PilT protein domain protein  YP_003461042  decreased coverage  2.95608e-07  hitchhiker  2.37096e-11  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1816  CDS  NC_013889  1931703  1931954  252  prevent-host-death family protein  YP_003461043  decreased coverage  2.1208e-07  hitchhiker  2.23341e-11  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_1858  CDS  NC_013889  1973988  1974620  633  OmpA domain protein transmembrane region-containing protein  YP_003461085  decreased coverage  0.00635914  normal  0.135318  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2078  CDS  NC_013889  2198223  2198531  309  hypothetical protein  YP_003461305  decreased coverage  0.00289353  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2166  CDS  NC_013889  2276582  2277403  822  ribosomal protein L2  YP_003461392  decreased coverage  0.000491264  normal  0.227842  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2169  CDS  NC_013889  2278310  2278954  645  50S ribosomal protein L3  YP_003461395  decreased coverage  0.000300239  normal  0.384776  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2195  CDS  NC_013889  2310784  2311941  1158  cell division protein FtsZ  YP_003461421  decreased coverage  3.89118e-06  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2269  CDS  NC_013889  2388422  2390632  2211  integral membrane sensor signal transduction histidine kinase  YP_003461495  normal  decreased coverage  0.00414095  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2270  CDS  NC_013889  2390913  2391482  570  conserved hypothetical protein, proline rich; putative membrane anchored protein  YP_003461496  normal  decreased coverage  0.00227194  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2382  CDS  NC_013889  2500670  2502031  1362  MiaB-like tRNA modifying enzyme YliG  YP_003461608  decreased coverage  0.00199073  normal  0.128025  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2434  CDS  NC_013889  2554905  2556233  1329  hypothetical protein  YP_003461660  decreased coverage  5.16263e-06  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2499  CDS  NC_013889  2625439  2628246  2808  PEP-CTERM system TPR-repeat lipoprotein  YP_003461725  decreased coverage  0.00842249  normal  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2575  CDS  NC_013889  2717686  2718630  945  glycyl-tRNA synthetase, alpha subunit  YP_003461800  normal  decreased coverage  0.000932417  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2576  CDS  NC_013889  2718717  2719988  1272  cation diffusion facilitator family transporter  YP_003461801  normal  decreased coverage  0.00102277  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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TK90_2811  CDS  NC_013930  162191  163996  1806  phosphoesterase RecJ domain protein  YP_003494763  decreased coverage  0.0042307  normal  0.888498  Thioalkalivibrio sp. K90mix  Bacteria 
 
 
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