27 homologs were found in PanDaTox collection
for query gene Sden_1896 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007954  Sden_1896  hypothetical protein  100 
 
 		 161 aa  330  4e-90  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
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NC_003910  CPS_3921  putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase  57.02 
 
 		 114 aa  139  1.9999999999999998e-32  Colwellia psychrerythraea 34H  Bacteria  normal  0.850012  n/a   
 
 
-
 
NC_009441  Fjoh_3391  hypothetical protein  49.09 
 
 		 114 aa  112  3e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  0.100696  n/a   
 
 
-
 
NC_009439  Pmen_1340  5-carboxymethyl-2-hydroxymuconate isomerase-like protein  29.09 
 
 		 117 aa  74.7  0.0000000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.271195  normal  1 
 
 
-
 
NC_011004  Rpal_3395  5-carboxymethyl-2-hydroxymuconate isomerase  30.56 
 
 		 114 aa  65.5  0.0000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0493493  n/a   
 
 
-
 
NC_007778  RPB_2522  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.63 
 
 		 115 aa  62.4  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_2612  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  26.55 
 
 		 113 aa  61.2  0.000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I0284  5-carboxymethyl-2-hydroxymuconate isomerase  30 
 
 		 116 aa  60.5  0.00000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3292  5-carboxymethyl-2-hydroxymuconate isomerase  29.82 
 
 		 116 aa  58.5  0.00000004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
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NC_009831  Ssed_1837  5-carboxymethyl-2-hydroxymuconate isomerase  31.19 
 
 		 117 aa  57.8  0.00000007  Shewanella sediminis HAW-EB3  Bacteria  normal  0.60746  normal  1 
 
 
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NC_009092  Shew_1507  5-carboxymethyl-2-hydroxymuconate isomerase  28.44 
 
 		 115 aa  55.8  0.0000003  Shewanella loihica PV-4  Bacteria  normal  0.0110902  normal  0.8408 
 
 
-
 
NC_008700  Sama_2103  putative 5-carboxymethyl-2-hydroxymuconate D-isomerase  28.7 
 
 		 113 aa  55.5  0.0000003  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.733883 
 
 
-
 
NC_010506  Swoo_0976  5-carboxymethyl-2-hydroxymuconate isomerase  28.7 
 
 		 111 aa  55.5  0.0000003  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.872717 
 
 
-
 
NC_009901  Spea_1603  5-carboxymethyl-2-hydroxymuconate isomerase  28.44 
 
 		 114 aa  52.8  0.000002  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00936983  n/a   
 
 
-
 
NC_010002  Daci_1831  5-carboxymethyl-2-hydroxymuconate isomerase  28.7 
 
 		 119 aa  49.7  0.00002  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A2242  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  26.36 
 
 		 116 aa  47.8  0.00007  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_001759  5-carboxymethyl-2-hydroxymuconate delta-isomerase  25.44 
 
 		 115 aa  47  0.0001  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4733  5-carboxymethyl-2-hydroxymuconate isomerase  27.47 
 
 		 144 aa  45.1  0.0004  Cupriavidus metallidurans CH34  Bacteria  normal  0.154366  normal  0.594326 
 
 
-
 
NC_007204  Psyc_0136  hypothetical protein  38.67 
 
 		 124 aa  45.1  0.0004  Psychrobacter arcticus 273-4  Bacteria  normal  1  normal  0.250505 
 
 
-
 
NC_010501  PputW619_3901  5-carboxymethyl-2-hydroxymuconate isomerase  29.57 
 
 		 121 aa  44.7  0.0005  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008752  Aave_3846  5-carboxymethyl-2-hydroxymuconate isomerase  24.14 
 
 		 119 aa  44.3  0.0007  Acidovorax citrulli AAC00-1  Bacteria  normal  0.424362  normal  1 
 
 
-
 
NC_007511  Bcep18194_B0126  5-carboxymethyl-2-hydroxymuconate isomerase  32.95 
 
 		 136 aa  43.9  0.0008  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_00710  hypothetical protein  26.42 
 
 		 115 aa  43.9  0.001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008782  Ajs_3495  5-carboxymethyl-2-hydroxymuconate isomerase  23.28 
 
 		 120 aa  43.9  0.001  Acidovorax sp. JS42  Bacteria  normal  0.314238  normal  1 
 
 
-
 
NC_011992  Dtpsy_2818  5-carboxymethyl-2-hydroxymuconate isomerase  23.28 
 
 		 120 aa  43.9  0.001  Acidovorax ebreus TPSY  Bacteria  normal  0.423818  n/a   
 
 
-
 
NC_009674  Bcer98_0973  5-carboxymethyl-2-hydroxymuconate isomerase  23.08 
 
 		 132 aa  40.8  0.007  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_007969  Pcryo_0147  putative 5-carboxymethyl-2-hydroxymuconate isomerase  30.68 
 
 		 124 aa  40.4  0.009  Psychrobacter cryohalolentis K5  Bacteria  normal  1  normal  1 
 
 
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