42 homologs were found in PanDaTox collection
for query gene Patl_2612 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008228  Patl_2612  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  100 
 
 		 113 aa  229  7.000000000000001e-60  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
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NC_010506  Swoo_0976  5-carboxymethyl-2-hydroxymuconate isomerase  41.82 
 
 		 111 aa  79.3  0.00000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.872717 
 
 
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NC_009831  Ssed_1837  5-carboxymethyl-2-hydroxymuconate isomerase  36.7 
 
 		 117 aa  73.6  0.0000000000009  Shewanella sediminis HAW-EB3  Bacteria  normal  0.60746  normal  1 
 
 
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NC_009092  Shew_1507  5-carboxymethyl-2-hydroxymuconate isomerase  36.7 
 
 		 115 aa  68.9  0.00000000002  Shewanella loihica PV-4  Bacteria  normal  0.0110902  normal  0.8408 
 
 
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NC_009441  Fjoh_3391  hypothetical protein  29.63 
 
 		 114 aa  66.2  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.100696  n/a   
 
 
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NC_009654  Mmwyl1_3292  5-carboxymethyl-2-hydroxymuconate isomerase  35.19 
 
 		 116 aa  65.1  0.0000000003  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
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NC_009901  Spea_1603  5-carboxymethyl-2-hydroxymuconate isomerase  31.19 
 
 		 114 aa  62  0.000000002  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00936983  n/a   
 
 
-
 
NC_013456  VEA_001759  5-carboxymethyl-2-hydroxymuconate delta-isomerase  32.73 
 
 		 115 aa  62  0.000000003  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_1896  hypothetical protein  26.55 
 
 		 161 aa  61.2  0.000000005  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3921  putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase  27.27 
 
 		 114 aa  59.7  0.00000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.850012  n/a   
 
 
-
 
NC_009457  VC0395_A2242  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  31.68 
 
 		 116 aa  56.2  0.0000001  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I0284  5-carboxymethyl-2-hydroxymuconate isomerase  30.91 
 
 		 116 aa  55.8  0.0000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00710  hypothetical protein  30.84 
 
 		 115 aa  55.1  0.0000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2103  putative 5-carboxymethyl-2-hydroxymuconate D-isomerase  25 
 
 		 113 aa  52.4  0.000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.733883 
 
 
-
 
NC_009654  Mmwyl1_3173  5-carboxymethyl-2-hydroxymuconate isomerase  30.91 
 
 		 126 aa  52  0.000003  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00000163889  normal  1 
 
 
-
 
NC_009504  BOV_A1065  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.67 
 
 		 130 aa  48.9  0.00002  Brucella ovis ATCC 25840  Bacteria  normal  0.0224972  n/a   
 
 
-
 
NC_004311  BRA1162  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.67 
 
 		 130 aa  48.5  0.00003  Brucella suis 1330  Bacteria  normal  0.837994  n/a   
 
 
-
 
NC_009439  Pmen_1340  5-carboxymethyl-2-hydroxymuconate isomerase-like protein  25.93 
 
 		 117 aa  47.8  0.00005  Pseudomonas mendocina ymp  Bacteria  normal  0.271195  normal  1 
 
 
-
 
NC_007298  Daro_2149  5-carboxymethyl-2-hydroxymuconate isomerase  29.57 
 
 		 120 aa  45.8  0.0002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.339839 
 
 
-
 
NC_007511  Bcep18194_B0126  5-carboxymethyl-2-hydroxymuconate isomerase  28.7 
 
 		 136 aa  45.1  0.0004  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1779  5-carboxymethyl-2-hydroxymuconate isomerase  30 
 
 		 130 aa  44.7  0.0004  Burkholderia sp. 383  Bacteria  normal  1  normal  0.104013 
 
 
-
 
NC_008463  PA14_10610  5-carboxymethyl-2-hydroxymuconate isomerase  27.38 
 
 		 130 aa  43.9  0.0007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.650129  normal  1 
 
 
-
 
NC_009656  PSPA7_0967  5-carboxymethyl-2-hydroxymuconate isomerase  27.38 
 
 		 130 aa  43.9  0.0007  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_3504  5-carboxymethyl-2-hydroxymuconate isomerase  29.2 
 
 		 129 aa  43.9  0.0008  Jannaschia sp. CCS1  Bacteria  normal  1  hitchhiker  0.000217132 
 
 
-
 
NC_008781  Pnap_2718  5-carboxymethyl-2-hydroxymuconate isomerase  28.42 
 
 		 137 aa  43.1  0.001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.179185 
 
 
-
 
NC_010501  PputW619_3901  5-carboxymethyl-2-hydroxymuconate isomerase  31.3 
 
 		 121 aa  43.1  0.001  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008752  Aave_3846  5-carboxymethyl-2-hydroxymuconate isomerase  31.9 
 
 		 119 aa  43.1  0.001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.424362  normal  1 
 
 
-
 
NC_008391  Bamb_3657  5-carboxymethyl-2-hydroxymuconate isomerase  28.89 
 
 		 130 aa  42.4  0.002  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.480508 
 
 
-
 
NC_010552  BamMC406_4131  5-carboxymethyl-2-hydroxymuconate isomerase  28.89 
 
 		 130 aa  42.4  0.002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0956828  normal  1 
 
 
-
 
NC_011094  SeSA_A1168  5-carboxymethyl-2-hydroxymuconate delta isomerase  26.13 
 
 		 126 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.205401  normal  1 
 
 
-
 
NC_011083  SeHA_C1214  5-carboxymethyl-2-hydroxymuconate delta isomerase  26.13 
 
 		 126 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.171475  normal  1 
 
 
-
 
CP001509  ECD_04227  5-carboxymethyl-2-hydroxymuconate delta-isomerase  26.79 
 
 		 126 aa  41.6  0.003  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_04193  hypothetical protein  26.79 
 
 		 126 aa  41.6  0.003  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A1179  5-carboxymethyl-2-hydroxymuconate delta isomerase  26.13 
 
 		 126 aa  42  0.003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.898893  normal  1 
 
 
-
 
NC_011149  SeAg_B1063  5-carboxymethyl-2-hydroxymuconate delta isomerase  26.13 
 
 		 126 aa  42  0.003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_3705  5-carboxymethyl-2-hydroxymuconate isomerase  26.79 
 
 		 126 aa  41.6  0.003  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.263188 
 
 
-
 
NC_010002  Daci_1831  5-carboxymethyl-2-hydroxymuconate isomerase  30.67 
 
 		 119 aa  41.2  0.005  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_1956  5-carboxymethyl-2-hydroxymuconate isomerase  27.78 
 
 		 129 aa  40.8  0.007  Ralstonia pickettii 12J  Bacteria  normal  0.394051  normal  0.050021 
 
 
-
 
NC_009656  PSPA7_3330  hypothetical protein  28.07 
 
 		 123 aa  40.8  0.007  Pseudomonas aeruginosa PA7  Bacteria  normal  0.590634  n/a   
 
 
-
 
NC_007650  BTH_II1731  5-carboxymethyl-2-hydroxymuconate delta isomerase  26.67 
 
 		 130 aa  40.4  0.009  Burkholderia thailandensis E264  Bacteria  normal  0.628874  n/a   
 
 
-
 
NC_008782  Ajs_3495  5-carboxymethyl-2-hydroxymuconate isomerase  28.45 
 
 		 120 aa  40  0.01  Acidovorax sp. JS42  Bacteria  normal  0.314238  normal  1 
 
 
-
 
NC_011992  Dtpsy_2818  5-carboxymethyl-2-hydroxymuconate isomerase  28.45 
 
 		 120 aa  40  0.01  Acidovorax ebreus TPSY  Bacteria  normal  0.423818  n/a   
 
 
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