| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0284 |
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| Symbol | hpcD |
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| ID | 6989316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 333134 |
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| End bp | 333484 |
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| Gene Length | 351 bp |
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| Protein Length | 116 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643378664 |
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| Product | 5-carboxymethyl-2-hydroxymuconate isomerase |
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| Protein accession | YP_002261819 |
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| Protein GI | 209693891 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3232] 5-carboxymethyl-2-hydroxymuconate isomerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGCCGC ACTTAGTTAT GGAATATTCA AATTCAGCAG ACGAACGATT AAATATGCAG
GGCTTGTTAG AAGATTTACA TCAAGTGGCG ATAGAGTCGG AACTGTTTTC TGTTGATGAT
GTTAAATCAA GGGCGATTCG AGTGCATTCA TGGTTAGTTG GCGATAAAGG AAATAGTGTG
GACTTTATTC ACATTACCAT CGAGCTACTG TCAGGCAGAA CCACTGAGCA AAAAAGAGAA
CTCAGTCGAG CATTAATGGA TGTACTAGCA GAACAGGCGA GCCATATTGA TAGCCTCACG
ATTAATGTGC GTGATATGGA AAAAGAAAGC TTTCAAAAAG TGGGTCAATA A
|
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| Protein sequence | MMPHLVMEYS NSADERLNMQ GLLEDLHQVA IESELFSVDD VKSRAIRVHS WLVGDKGNSV
DFIHITIELL SGRTTEQKRE LSRALMDVLA EQASHIDSLT INVRDMEKES FQKVGQ
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