| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1896 |
|---|
| Symbol | |
|---|
| ID | 4018384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2226869 |
|---|
| End bp | 2227354 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637955917 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_562902 |
|---|
| Protein GI | 91793251 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3232] 5-carboxymethyl-2-hydroxymuconate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCATT TTATTGTCGA TTGTTCAGAA GAGATCTTAG TATCCCATAG CGTAGAAACC
ATCCTTAAGT ATTTGCATCA AGTGGCAAAT AACACCAAGC TTTTTGATGA AAGTGATATC
AAGGTACGAA TCAATCCCTT TAAAACCTTC CTCGTTGGTA ATAAAAAACA GCCCTTCATT
CATGTATTTG CCCATATCAT GGAGGGGCGA ACTGATGAAG AAAAAACAAA TTTATCTACC
CTGATGGTCA AACGCTTATC CATGATGTTT CCGGTTGTGG AATATATCTC CATGAATATC
GTCGACTTTA ATAAGACGGG TTATGTCAAC TTGGTGTTAT TGCATGCCGA AGCGGAGCAG
AAAAAAGTGA TTACTACCCC GGTAGGTGAA AAGCCAGAAA CAGTTAAAGA GGGCACCGCG
GCAGTTGAAG CGACTCAGGT TGAACCAGCT AGCACTAGCC AAGGTAGTAC TAAAGGCACA
GCCTAA
|
|---|
| Protein sequence | MPHFIVDCSE EILVSHSVET ILKYLHQVAN NTKLFDESDI KVRINPFKTF LVGNKKQPFI
HVFAHIMEGR TDEEKTNLST LMVKRLSMMF PVVEYISMNI VDFNKTGYVN LVLLHAEAEQ
KKVITTPVGE KPETVKEGTA AVEATQVEPA STSQGSTKGT A
|
|---|
| |