23 homologs were found in PanDaTox collection
for query gene Pmen_1340 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_1340  5-carboxymethyl-2-hydroxymuconate isomerase-like protein  100 
 
 		 117 aa  238  1e-62  Pseudomonas mendocina ymp  Bacteria  normal  0.271195  normal  1 
 
 
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NC_009441  Fjoh_3391  hypothetical protein  35.14 
 
 		 114 aa  87  7e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.100696  n/a   
 
 
-
 
NC_009092  Shew_1507  5-carboxymethyl-2-hydroxymuconate isomerase  36.84 
 
 		 115 aa  80.1  0.00000000000001  Shewanella loihica PV-4  Bacteria  normal  0.0110902  normal  0.8408 
 
 
-
 
NC_003910  CPS_3921  putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase  28.83 
 
 		 114 aa  77.4  0.00000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.850012  n/a   
 
 
-
 
NC_009457  VC0395_A2242  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  36.94 
 
 		 116 aa  74.7  0.0000000000004  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
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NC_007954  Sden_1896  hypothetical protein  29.09 
 
 		 161 aa  74.7  0.0000000000004  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_001759  5-carboxymethyl-2-hydroxymuconate delta-isomerase  34.23 
 
 		 115 aa  69.3  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_1603  5-carboxymethyl-2-hydroxymuconate isomerase  34.21 
 
 		 114 aa  68.9  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00936983  n/a   
 
 
-
 
NC_011004  Rpal_3395  5-carboxymethyl-2-hydroxymuconate isomerase  29.73 
 
 		 114 aa  66.2  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0493493  n/a   
 
 
-
 
NC_008700  Sama_2103  putative 5-carboxymethyl-2-hydroxymuconate D-isomerase  27.62 
 
 		 113 aa  65.5  0.0000000002  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.733883 
 
 
-
 
NC_009783  VIBHAR_00710  hypothetical protein  34.23 
 
 		 115 aa  65.5  0.0000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0284  5-carboxymethyl-2-hydroxymuconate isomerase  30.63 
 
 		 116 aa  66.2  0.0000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1837  5-carboxymethyl-2-hydroxymuconate isomerase  30.43 
 
 		 117 aa  63.2  0.000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  0.60746  normal  1 
 
 
-
 
NC_007778  RPB_2522  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.73 
 
 		 115 aa  62.4  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_3292  5-carboxymethyl-2-hydroxymuconate isomerase  26.13 
 
 		 116 aa  60.8  0.000000006  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0976  5-carboxymethyl-2-hydroxymuconate isomerase  30.36 
 
 		 111 aa  48.5  0.00003  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.872717 
 
 
-
 
NC_008228  Patl_2612  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  25.93 
 
 		 113 aa  47.8  0.00005  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009504  BOV_A1065  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.09 
 
 		 130 aa  45.4  0.0002  Brucella ovis ATCC 25840  Bacteria  normal  0.0224972  n/a   
 
 
-
 
NC_004311  BRA1162  5-carboxymethyl-2-hydroxymuconate delta isomerase  29.09 
 
 		 130 aa  45.4  0.0002  Brucella suis 1330  Bacteria  normal  0.837994  n/a   
 
 
-
 
NC_007958  RPD_3590  5-carboxymethyl-2-hydroxymuconate isomerase  26.02 
 
 		 132 aa  42.4  0.002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.421371  normal  0.741818 
 
 
-
 
NC_010501  PputW619_3901  5-carboxymethyl-2-hydroxymuconate isomerase  27.73 
 
 		 121 aa  41.6  0.004  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_1707  5-carboxymethyl-2-hydroxymuconate isomerase  36.11 
 
 		 132 aa  40.4  0.007  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.214837  normal  0.557794 
 
 
-
 
NC_007511  Bcep18194_B0126  5-carboxymethyl-2-hydroxymuconate isomerase  29.55 
 
 		 136 aa  40.4  0.009  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
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