41 homologs were found in PanDaTox collection
for query gene Pmob_1580 on replicon NC_010003
Organism: Petrotoga mobilis SJ95



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010003  Pmob_1580  positive regulator of sigma E, RseC/MucC  100 
 
 		 151 aa  301  2.0000000000000002e-81  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_1514  positive regulator of sigma E, RseC/MucC  37.3 
 
 		 150 aa  76.6  0.00000000000009  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  28.67 
 
 		 152 aa  72.4  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  29.37 
 
 		 149 aa  68.9  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_009616  Tmel_0249  positive regulator of sigma E, RseC/MucC  34.81 
 
 		 132 aa  63.5  0.0000000009  Thermosipho melanesiensis BI429  Bacteria  normal  1  n/a   
 
 
-
 
NC_009486  Tpet_1427  positive regulator of sigma E, RseC/MucC  35.29 
 
 		 115 aa  60.5  0.000000008  Thermotoga petrophila RKU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010483  TRQ2_1473  positive regulator of sigma E, RseC/MucC  34.45 
 
 		 126 aa  58.9  0.00000002  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  27.4 
 
 		 157 aa  59.3  0.00000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  28.87 
 
 		 151 aa  52.4  0.000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  28.87 
 
 		 151 aa  52.4  0.000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  28.87 
 
 		 151 aa  52.4  0.000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  27.14 
 
 		 150 aa  52  0.000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  26.43 
 
 		 150 aa  51.6  0.000004  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  28.97 
 
 		 151 aa  51.2  0.000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  31.03 
 
 		 159 aa  50.8  0.000006  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  25.52 
 
 		 155 aa  47.8  0.00005  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  24.41 
 
 		 167 aa  47.8  0.00005  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  34.18 
 
 		 146 aa  48.1  0.00005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  26.9 
 
 		 157 aa  47.4  0.00007  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  22.56 
 
 		 156 aa  47.4  0.00007  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_011661  Dtur_1301  positive regulator of sigma E, RseC/MucC  30 
 
 		 136 aa  47.4  0.00008  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  24.5 
 
 		 168 aa  45.8  0.0002  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  27.08 
 
 		 159 aa  45.8  0.0002  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  27.78 
 
 		 159 aa  45.1  0.0003  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  27.78 
 
 		 159 aa  45.1  0.0003  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  27.78 
 
 		 159 aa  45.1  0.0003  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  29.63 
 
 		 143 aa  44.7  0.0004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  27.08 
 
 		 159 aa  44.7  0.0005  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  27.08 
 
 		 159 aa  44.7  0.0005  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02428  hypothetical protein  27.08 
 
 		 159 aa  44.7  0.0005  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  23.61 
 
 		 147 aa  44.3  0.0005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  27.08 
 
 		 159 aa  44.7  0.0005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  27.08 
 
 		 159 aa  44.7  0.0005  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  25.69 
 
 		 159 aa  40.8  0.006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  27.63 
 
 		 157 aa  40.8  0.007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  28.46 
 
 		 183 aa  40.8  0.007  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013171  Apre_0914  positive regulator of sigma E, RseC/MucC  28.75 
 
 		 138 aa  40.4  0.008  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  25 
 
 		 159 aa  40  0.01  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  25 
 
 		 159 aa  40  0.01  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  25 
 
 		 159 aa  40  0.01  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  25 
 
 		 159 aa  40  0.01  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>