18 homologs were found in PanDaTox collection
for query gene Pmen_3830 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_3830  hypothetical protein  100 
 
 		 344 aa  692    Pseudomonas mendocina ymp  Bacteria  normal  0.985949  normal  1 
 
 
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NC_008786  Veis_2711  putative sugar ABC transporter, substrate-binding protein  41.39 
 
 		 369 aa  246  4e-64  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.210601 
 
 
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NC_012791  Vapar_3345  putative sugar ABC transporter, substrate-binding protein  42.6 
 
 		 373 aa  244  1.9999999999999999e-63  Variovorax paradoxus S110  Bacteria  normal  0.643163  n/a   
 
 
-
 
NC_008709  Ping_1312  ABC transporter substrate-binding protein or LacI-type transcriptional regulator  37.9 
 
 		 357 aa  223  4e-57  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_5185  putative signal peptide protein  40.43 
 
 		 377 aa  222  9e-57  Burkholderia phymatum STM815  Bacteria  normal  0.296404  normal  0.0737238 
 
 
-
 
NC_012917  PC1_3690  hypothetical protein  38.65 
 
 		 366 aa  213  4.9999999999999996e-54  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
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NC_008309  HS_0765  ABC-type sugar-binding periplasmic protein  36.78 
 
 		 369 aa  212  7e-54  Haemophilus somnus 129PT  Bacteria  normal  0.234513  n/a   
 
 
-
 
NC_013421  Pecwa_3887  hypothetical protein  38.65 
 
 		 366 aa  211  1e-53  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5039  ABC-type sugar transport system, periplasmic component  39.76 
 
 		 364 aa  211  1e-53  Agrobacterium vitis S4  Bacteria  normal  0.797463  n/a   
 
 
-
 
NC_009832  Spro_3931  hypothetical protein  38.58 
 
 		 366 aa  209  4e-53  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011368  Rleg2_4516  putative sugar ABC transporter, substrate-binding protein  40.24 
 
 		 365 aa  207  2e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.112183  normal  1 
 
 
-
 
NC_003296  RS02363  signal peptide protein  38.62 
 
 		 366 aa  206  3e-52  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.0272231 
 
 
-
 
NC_012854  Rleg_6409  putative sugar ABC transporter, substrate-binding protein  38.53 
 
 		 365 aa  197  3e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.000000237151  normal  0.403501 
 
 
-
 
NC_009484  Acry_1595  ABC-type sugar transport system periplasmic component-like protein  38.97 
 
 		 368 aa  188  1e-46  Acidiphilium cryptum JF-5  Bacteria  normal  0.32236  n/a   
 
 
-
 
NC_008699  Noca_0679  ABC-type sugar transport system periplasmic component-like  22.32 
 
 		 387 aa  48.5  0.0001  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_0604  ABC-type sugar transport system periplasmic component-like  23.26 
 
 		 391 aa  46.2  0.0008  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_0588  ABC-type sugar transport system periplasmic component-like  22.66 
 
 		 390 aa  43.9  0.004  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2342  ABC-type sugar transport system periplasmic component-like protein  23.03 
 
 		 378 aa  42.7  0.01  Conexibacter woesei DSM 14684  Bacteria  normal  0.759463  normal  0.08592 
 
 
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